PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032165001
Common NameGSBRNA2T00032165001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 389aa    MW: 44960 Da    PI: 4.6253
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032165001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.4e-35611532103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed+++++++sws+ +nsf+v+d++ f++++Lp++Fkh+nf+SF RQLn+YgF+kv+ ++         weF+++ F +g+k
  GSBRNA2T00032165001  61 FLTKTYDLVEDSRTNHVVSWSQAKNSFIVWDPQAFSTSLLPRFFKHNNFSSFARQLNTYGFRKVNPDR---------WEFANEGFLRGQK 141
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  GSBRNA2T00032165001 142 HLLKTIRRRKTS 153
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.75E-3456150IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.6E-3857150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-5757150IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-186184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-18112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDPSYRFIKE EFPTGFIVSP SPPSSSTYSY LYSTSMAPND PTTSSSPQPI EGLHESGPPP  60
FLTKTYDLVE DSRTNHVVSW SQAKNSFIVW DPQAFSTSLL PRFFKHNNFS SFARQLNTYG  120
FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTSNNNQIQP PQSSSQEHSL DNCCIEVGRY  180
DLDGEMDSLK QDKQVLVMEL VKLRHQQEST KVYLKLIEEK LKKTESKQQQ MMSFLARAMQ  240
NPDFLQQLME QKEKRKEMEE AISKKRQRPI DQGTRNVVTV EDYDDDDSAY MKQEMYGDLS  300
GFEMPELDSL AMHIQGLGDQ FTRKEVLDVE KRDEEGEQEG YQKVNNEIYG EGFWEDMLNE  360
GQNFDFEGDE ENVDVLIEQL GYLGSSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-245615312123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032165001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584623.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_013695886.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A078FA810.0A0A078FA81_BRANA; BnaC05g29680D protein
STRINGBo5g093470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-179heat shock transcription factor A6B
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]