PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00031913001
Common NameGSBRNA2T00031913001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 276aa    MW: 31513.7 Da    PI: 10.1174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00031913001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.5e-11145252181
                          EEEE-..-HHHHT.T-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE.........EEETTE...... CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliy.......rkksgr...... 58 
                          f+k+l+ sdv+ + +r+ +p k ++++                  g+kk  +++  l +e++++W++ ++        +    +      
  GSBRNA2T00031913001 145 FEKTLSVSDVNPNqSRFLIPFKKLKRNdfltqeessfleqdenkkGMKK-PGVEALLVNERSQTWSLVFKRwvmkkekD----Sqngsln 229
                          8899999999987789999999999999999999999999888855554.568***************95558866331....2346788 PP

                          EEE-TTHHHHHHHHT--TT-EEE CS
                   B3  59 yvltkGWkeFvkangLkegDfvv 81 
                          yvl +GW++ vk+n+Lk++D + 
  GSBRNA2T00031913001 230 YVLNRGWNDIVKDNKLKANDKIS 252
                          ********************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037541.3E-32137242IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.107.5E-20139268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-18141267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-11144266No hitNo description
PROSITE profilePS5086311.589165270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MKSGEDDHYP LRMKINWSNI CDKVTKTLED AMLKAKSSSS SSPRILKFDL NELPPSDTDD  60
EEQDEAKRRD HKVSSGASSR FCNNFDLNKS PKEEPPNHDD HKVTQNSLNP KPLKKRGRGS  120
SGRLNKAKKQ RLNVALEVKD AILIFEKTLS VSDVNPNQSR FLIPFKKLKR NDFLTQEESS  180
FLEQDENKKG MKKPGVEALL VNERSQTWSL VFKRWVMKKE KDSQNGSLNY VLNRGWNDIV  240
KDNKLKANDK ISLWSFRFDG VLCFSLVTHP STISS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00031913001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022558432.10.0putative B3 domain-containing protein At3g49610
TrEMBLA0A078F6L60.0A0A078F6L6_BRANA; BnaC05g03530D protein
TrEMBLA0A3P6FF100.0A0A3P6FF10_BRAOL; Uncharacterized protein
STRINGBra015425.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.11e-32B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]