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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00030498001 |
Common Name | GSBRNA2T00030498001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
GRAS |
Protein Properties |
Length: 540aa MW: 59990.9 Da PI: 4.8439 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00030498001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 429.1 | 3.6e-131 | 169 | 539 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+ L++cA a+s+g+ e+a +lL++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e + s+e+laa+++++ev+P++k
GSBRNA2T00030498001 169 QMLISCALALSEGKSEEALSLLNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALRCKEPP---SDERLAAMQVLFEVCPCFK 255
79*****************************************************************9...9****************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
f++l+aN aI+e++ e++vHiiDfd++qG Q+++L++++a+ p++ p +R+Tgv++pes+ s l+ +g rL+++A+ gv+f+f++
GSBRNA2T00030498001 256 FGYLAANGAIVESIRDEKEVHIIDFDVNQGNQYMTLIKTIAELPGKGPLMRLTGVDDPESVqrSVGGLRIIGLRLEQLAKDHGVSFKFRA 345
***********************************************************9989999************************ PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
+++k+ +++++L +kpgEal+Vn+++qlh+++desv++ ++rd +L++vk+l+Pk+v+vveq++++n+++F+ rf+ea eyysa+fds
GSBRNA2T00030498001 346 VASKTSLIVSPSALGCKPGEALIVNFAFQLHHMPDESVTVVNQRDVLLHMVKGLNPKLVTVVEQDVNTNTSPFFPRFVEAYEYYSAVFDS 435
988899999********************************************************************************* PP
GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
l+++lpres+er++vEr++l+r+ivnvvaceg+er+er e ++kWr+r+++aGF++ p+++++a ++++l+++ + y+v+ee g+l++
GSBRNA2T00030498001 436 LDVTLPRESQERMNVERQCLARDIVNVVACEGEERIERYEVAGKWRARMMMAGFSSRPMGSRVARSMQSLIKEEYCSKYKVKEEMGELLF 525
***************************************************************************666************ PP
GRAS 361 gWkdrpLvsvSaWr 374
+W+d++L+++SaWr
GSBRNA2T00030498001 526 YWEDKSLIVASAWR 539
*************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 540 aa
Download sequence Send
to blast |
MVEQTARVMS LVSSAEPSAA AYKNPKLYSL NENGYNSDGG ASVEIFDPDR SKNTSYFLDS 60 PTEQHPVASG AASVSSFGSL DSFPYQSRPV LGSSMEFDDE QMRSKIQELE RALLSDEDDN 120 IMEGLDHLME IDNEWSYQNH SNKDSSSADS NSHSSSSKEV VSQATTPKQM LISCALALSE 180 GKSEEALSLL NELRQIVSIQ GDPSQRIAAY MVEGLAARMA ASGKFLYRAL RCKEPPSDER 240 LAAMQVLFEV CPCFKFGYLA ANGAIVESIR DEKEVHIIDF DVNQGNQYMT LIKTIAELPG 300 KGPLMRLTGV DDPESVQRSV GGLRIIGLRL EQLAKDHGVS FKFRAVASKT SLIVSPSALG 360 CKPGEALIVN FAFQLHHMPD ESVTVVNQRD VLLHMVKGLN PKLVTVVEQD VNTNTSPFFP 420 RFVEAYEYYS AVFDSLDVTL PRESQERMNV ERQCLARDIV NVVACEGEER IERYEVAGKW 480 RARMMMAGFS SRPMGSRVAR SMQSLIKEEY CSKYKVKEEM GELLFYWEDK SLIVASAWR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |