PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027844001
Common NameGSBRNA2T00027844001, LOC106443318
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 182aa    MW: 19987.3 Da    PI: 8.4983
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027844001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-183988255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  GSBRNA2T00027844001 39 NFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALAIKG 88
                         69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-123888IPR001471AP2/ERF domain
CDDcd000182.68E-333898No hitNo description
PROSITE profilePS5103222.5633996IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-213997IPR016177DNA-binding domain
SMARTSM003803.2E-3839102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-323997IPR001471AP2/ERF domain
PRINTSPR003675.0E-104051IPR001471AP2/ERF domain
PRINTSPR003675.0E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MQDSSLPRSE RNLRSLVPER TGKNSKSKNE QKSVSKHPNF RGVRMRQWGK WVSEIREPRK  60
KSRIWLGTFS TPEMAARAHD VAALAIKGGS AHLNFPELAC HLPRPASADP KDIQAAAAAA  120
AVEWKAPESP SSTGTSSMTS SSVADDAFSD LPDLLVDAND HKVDGFWDSF PYEEPFFMGN  180
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1635961072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027844001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740342.11e-132ethylene-responsive transcription factor ERF039
SwissprotQ9SUK81e-95ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A078K0951e-130A0A078K095_BRANA; BnaCnng77210D protein
TrEMBLA0A3P6G7331e-130A0A3P6G733_BRAOL; Uncharacterized protein
STRINGBra040092.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.12e-95ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]