PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027163001
Common NameGSBRNA2T00027163001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 432aa    MW: 48666.7 Da    PI: 5.9404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027163001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13223267655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             Er RR ++N++fe L+ l+P++     +K + a+iL+  ++YIk+Lq
  GSBRNA2T00027163001 223 FTTERERRCHLNDRFEALKLLIPSP-----TKADRASILQDGIDYIKELQ 267
                          578**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.91E-13215271No hitNo description
SuperFamilySSF474595.76E-15217285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14217275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.64217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-11221267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MYEESLCFDP TPMVDAILNN NGGYSESTTA AETGFPVRNQ FQPPILVTGN TTNSFNDDLR  60
LPTMEEFSVF PSVVSFPSSE IQNLNDNNHM IQEMIHWSNW DNSGLFMNTS VPNTTTTPTP  120
DLLSLLHLPR RSMPLPSSNV SDILSGSCFT YDPLFHLNLP PQPPLFPSAN YDYSGFFLDT  180
NTSQRDQSSA GDENNNAQLD SGIIDFSKKI RRKGRGKQKN KPFTTERERR CHLNDRFEAL  240
KLLIPSPTKA DRASILQDGI DYIKELQRRV SELKYLVERK KCGGRHNNNN NNSDDCINED  300
TNDDENIVKK LESDVRDQCS SNNSLRCSWL QRKSKVTEVD VRIVDDEVTI KVFQKKKINC  360
LLVVSKVLDQ LHLDLHHVAG GQIGEHYCFL LNTKINEGST IYASAVANKV IEVVDQHHMA  420
ALPINKFLLL G*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027163001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635096.10.0PREDICTED: transcription factor bHLH91-like
RefseqXP_022567095.10.0transcription factor bHLH91-like
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A078GHG80.0A0A078GHG8_BRANA; BnaC04g13540D protein
TrEMBLA0A0D3BT840.0A0A0D3BT84_BRAOL; Uncharacterized protein
STRINGBo4g052450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-166bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]