PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00026202001
Common NameGSBRNA2T00026202001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 510aa    MW: 57920.7 Da    PI: 6.6476
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00026202001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN33491e-106454051354
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          eel+k+ wkd+++lk+lke++k+ l++++      k+    e++r++ m +aQDgiLkYM k+me c+aqGfvYg + ++gk+v+g+sd+
  GSBRNA2T00026202001  45 EELEKKIWKDKQRLKQLKEMSKNGLGRASL-----KQPPDDEHSRKRMMYQAQDGILKYMSKTMERCKAQGFVYGVVFQNGKTVTGSSDN 129
                          8**********************9866555.....678999************************************************* PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.......XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlil.sgessl.qt..ersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtG 176
                          Lr+WW+++v+fdrngpaai k+q + +++ +++++l  +   ++ + h+l elqDTtlg+LLsalm  c+ppqrr+plekgv+pPWWPtG
  GSBRNA2T00026202001 130 LRGWWRDQVRFDRNGPAAILKHQREINLSaTDGNELgYSedGGECTAHKLLELQDTTLGALLSALMPNCKPPQRRYPLEKGVPPPWWPTG 219
                          **********************7765554144454443311356679******************************************* PP

                          --HHHHHHT--TT--...-----GGG--HHHHHHHHHHHHHHT.GGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX CS
                 EIN3 177 kelwwgelglskdqg..tppykkphdlkkawkvsvLtavikhm.sptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah 263
                          ke+wwg l l+   +  +p y+kph lkk+wkv++L  vi+hm + +i+ i +l+ +s  lq+km+++e   +l+ ln+e++++ + + +
  GSBRNA2T00026202001 220 KEDWWGDLPLPDGCRghPPAYRKPHGLKKMWKVGILIGVIRHMmASDINDIAKLVGRSTTLQEKMTSREGSLWLAALNREKAIASQSQEQ 309
                          **************999*************************85799*********************************9988888877 PP

                          XX..XXXX.....XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXX CS
                 EIN3 264 ss..slrk.....qspkvtlsceqkedvegkkeskikhvqavktta..gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifa 344
                          +   s  +     +++++ + + +++dveg   ++ +  ++ +  +  +f+ v   k+  + +      ++  tc++s +++s +e++f+
  GSBRNA2T00026202001 310 PLtfS--EedgtgGETDTLFPEPADYDVEGSVGPRHRLNRQFHGFDnnNFNSVYNNKR--RFEGESLHPGTNLTCENSPCPYSRPEMGFN 395
                          44331..22344588999999999*****77666655555555444125666666553..3333334455679***************** PP

                          XXXXXXXXXX CS
                 EIN3 345 dknsisqney 354
                          d+  ++++++
  GSBRNA2T00026202001 396 DRVLRENHQM 405
                          ********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.9E-10345300No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-55172307IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.28E-49176303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MYNTNIGMFP TLVTSPVPRF PEGETCFASL NTTCNDPTEE EMEIEELEKK IWKDKQRLKQ  60
LKEMSKNGLG RASLKQPPDD EHSRKRMMYQ AQDGILKYMS KTMERCKAQG FVYGVVFQNG  120
KTVTGSSDNL RGWWRDQVRF DRNGPAAILK HQREINLSAT DGNELGYSED GGECTAHKLL  180
ELQDTTLGAL LSALMPNCKP PQRRYPLEKG VPPPWWPTGK EDWWGDLPLP DGCRGHPPAY  240
RKPHGLKKMW KVGILIGVIR HMMASDINDI AKLVGRSTTL QEKMTSREGS LWLAALNREK  300
AIASQSQEQP LTFSEEDGTG GETDTLFPEP ADYDVEGSVG PRHRLNRQFH GFDNNNFNSV  360
YNNKRRFEGE SLHPGTNLTC ENSPCPYSRP EMGFNDRVLR ENHQMTCPYK QPTEPFYQPA  420
EPFGMPYPDY NRSFYGNRPE SQSIPDNFTQ SNNLYRPKAA ERGGNTSVMN HNTNNGYAQT  480
NTNNGYAQTV GMENYHQNQD QDLSMPWIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A7e-471753052129Protein ETHYLENE INSENSITIVE 3
4zds_B7e-471753052129Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00026202001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895830.0AC189583.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609378.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 2 protein
SwissprotO231150.0EIL2_ARATH; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLA0A078J7U20.0A0A078J7U2_BRANA; BnaCnng35080D protein
STRINGBo9g150010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147191621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21120.10.0ETHYLENE-INSENSITIVE3-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]