PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022855001
Common NameGSBRNA2T00022855001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 360aa    MW: 40613.9 Da    PI: 7.1156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022855001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-05199218120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  GSBRNA2T00022855001 199 FSCPLCFKTFNRYNNMQMHM 218
                          89*****************9 PP
2zf-C2H212.90.00032283305123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk F  k + ++H +++
  GSBRNA2T00022855001 283 FACRRCGKAFAVKGDWRTHEKNC 305
                          78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66199226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SuperFamilySSF576673.69E-6269303No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5270303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSDPACIFRN GFLDNYDYSF NYSTSLSHIY NSNGSFYSSN TTNINPNSTS PDSPPLREAL  60
PLLSLSPIHK HQEASVPHHE YYFMETIKQS SNSNLFDHDL GQCQETQHHD VTVDLHLGLP  120
NLGGDAIACG GGGSSSSDAI LDSTDQEHHH DFHQDRHQYQ EVEVTLVSDH DGHGGVQRGI  180
HHQYWIPTPS QILMGPTQFS CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM  240
LRLSCYCCAP GCKNNINHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT  300
HEKNCGKLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGN DCFGYHEDEE AASDVEHQD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.146000.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022855001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118111e-174AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110075.10.0PREDICTED: zinc finger protein WIP4-like
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A078J2W50.0A0A078J2W5_BRANA; BnaA01g36760D protein
STRINGBra023918.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]