PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022407001
Common NameGSBRNA2T00022407001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 241aa    MW: 27416.7 Da    PI: 8.4315
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022407001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-057493120
                         EEETTTTEEESSHHHHHHHH CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                         ++Cp C k+F+r  n++ H+
  GSBRNA2T00022407001 74 FSCPVCFKTFNRYNNMQMHM 93
                         89*****************9 PP
2zf-C2H215.26.1e-05158180123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk F  + + ++H +++
  GSBRNA2T00022407001 158 FMCRKCGKAFAVRGDWRTHEKNC 180
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.33E-57097No hitNo description
SMARTSM003550.387496IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-67493IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.07674101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SuperFamilySSF576678.92E-7140178No hitNo description
Gene3DG3DSA:3.30.160.605.7E-6154178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549158178IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808158178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MASFLTLSSS SSSSRTTHHH ENMNNQIDLD NDYHHEGDDE DSVGGDGACR ISRLNKGQYW  60
IPTPSQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSEY RKGPESLRGT QPTGMLRLPC  120
YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC  180
GKLWYCICGS DFKHKRSLKD HIKAFGNGHG AYGINGFDDE DETASEVEQL DNDHESRRSK  240
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022407001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705599.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-160ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A078J4F20.0A0A078J4F2_BRANA; BnaC06g42710D protein
STRINGBra003295.1-P1e-173(Brassica rapa)
STRINGBo6g073120.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-151C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]