PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00013713001

Common Name

GSBRNA2T00013713001, LOC106382530

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 300aa MW: 34280.9 Da PI: 7.7895

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00013713001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.7	1.9e-31	144	197	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+ GSBRNA2T00013713001 144 PRMRWTTTLHAHFVRAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 197 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.48E-15	141	198	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-27	142	198	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	144	198	IPR006447	Myb domain, plants
Pfam	PF00249	7.3E-7	145	196	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MELFPSQPDL NLNISRRREE QDDKEQEQVE RRLVYQSQAS DSVRNASGHL IDTVKFTSNY 60 EPTKFYHYQE HNESQDQDSR SILMVSQNQT LGHYYYSPTP PFFFSEVNGQ HANPNYSYKL 120 HHGHRRQAQP QPQRCTAKRG VRAPRMRWTT TLHAHFVRAV QLLGGHERAT PKSVLELMDV 180 QDLTLAHVKS HLQMYRTIKS TEKPTTSPGQ SDTCENGSQV KSERQARDLQ GLWNNSSSEA 240 RLHLKANASG LDVSSNKKVD QRCESYELLS SDSSSLTWTR PETETPNLDF TLATPNLPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-16	145	199	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-16	145	199	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-16	145	199	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-16	145	199	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-16	145	199	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-16	145	199	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-16	145	199	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-16	145	199	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269\|PubMed:14561401}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00013713001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353455	0.0	AK353455.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013600916.1	0.0	PREDICTED: probable transcription factor KAN3 isoform X1
Refseq	XP_013678013.1	0.0	probable transcription factor KAN3 isoform X1
Swissprot	Q941I2	1e-141	KAN3_ARATH; Probable transcription factor KAN3
TrEMBL	A0A078ISY3	0.0	A0A078ISY3_BRANA; BnaCnng26550D protein
TrEMBL	A0A0D3DMJ2	0.0	A0A0D3DMJ2_BRAOL; Uncharacterized protein
STRING	Bo8g049650.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13984	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	1e-136	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	106382530

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]