PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013626001
Common NameGSBRNA2T00013626001, LOC106419857
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 381aa    MW: 43788.3 Da    PI: 5.3995
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013626001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10209251754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            Er+RR+riN+++  Lr l+P       +K++K  +   Av+YI++L
  GSBRNA2T00013626001 209 HSERKRRERINQRIYALRALVPVI-----TKMNKNGTISDAVDYINEL 251
                          57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.6E-189159IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.77E-11200256No hitNo description
SuperFamilySSF474591.31E-14201264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.704202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-12209265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-8209251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MMRGVERVKE FLRPLVDSRD WDFCVIWKLG DDPSRFIEWV GCCCSGSYTD TNIKHENVEE  60
EEEEEEERQK MGSICRDEHN KHHIRSLSCE ALSRFPLFIP LYPGIHGEVV MSKSPKWLVN  120
SSPGSKQDIF RTRVLVPVRD GLVELFSFMM KPVDESMVDL IISRCNAFLE QSLPCLVMNK  180
EEDVVMQDII DGKANKKLTE EHFKSKNLHS ERKRRERINQ RIYALRALVP VITKMNKNGT  240
ISDAVDYINE LLVEKQTLED ELSGINEIEC RAEEEAVRVS SKLNMNVNNE VNLEVHETGE  300
GEFLIRVTQE HKRDGFKRLI EAVDSCGLEI INVNVTRLDL TVMTILNVKA NKYGITREDL  360
RDLLFKMIIT SAAVSVKHCT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215ERKRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013626001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716153.10.0transcription factor bHLH90
SwissprotQ0WNR24e-88BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A078IW500.0A0A078IW50_BRANA; BnaC08g49840D protein
STRINGBra031723.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.19e-89bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]