PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013286001
Common NameGSBRNA2T00013286001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 342aa    MW: 38433.3 Da    PI: 6.1884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013286001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.7e-08197243555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                          h+ +Er RR++i +++  L++++P +     kK    a +L + ++Y++sLq
  GSBRNA2T00013286001 197 HSLAERARREKISKKMKYLQDIVPGC-----KKvTGQAGMLDEIINYVQSLQ 243
                          999***********************.....77799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15189260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-15190261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-6190247No hitNo description
PROSITE profilePS5088813.91192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5197243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-6198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MLEGLVSPEN LSLSSMDMNV LERLKWLQQQ QQQVVSRTSD NSPELLQILQ FHGSNNDELL  60
QSTFSHFQML GSGFGPNPNM GFGPSHEAMD GCISRTSSFQ MDPVDTMGVM LKNSEENRTI  120
SSKNKRKSEV KRREEERTEK KIKVEAETES NMKGKSSMSN TEASSDTSKE TSKGASEIHK  180
LDYIHVRSRR SQATDRHSLA ERARREKISK KMKYLQDIVP GCKKVTGQAG MLDEIINYVQ  240
SLQTQIEFLS MKLAFLNPEL ELSVEDLYVK QLQDYFTNLP VVIASKPSIM VDVPLFPLDQ  300
QGSLDLSVIN LSQTTSTEAP SASWETQSRS LYNTSSLGFH Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.45661e-162flower| leaf| seed| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:23221598}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013286001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623004.10.0PREDICTED: transcription factor HBI1-like
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A078G8D80.0A0A078G8D8_BRANA; BnaC06g01430D protein
TrEMBLA0A0D3BEG10.0A0A0D3BEG1_BRAOL; Uncharacterized protein
STRINGBo3g094060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-165bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]