PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00012903001 | ||||||||
Common Name | GSBRNA2T00012903001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 531aa MW: 59447.2 Da PI: 8.7744 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 355 | 400 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L+ A +++ sLq GSBRNA2T00012903001 355 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLTIARDHLTSLQ 400 8899********************97.....8*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-15 | 350 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.243 | 350 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.88E-12 | 352 | 400 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 354 | 418 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-10 | 355 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-13 | 356 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MDAIFLTDDP NTRKQLIGSL AHSFGCIYVS LWSYYFPRPS NYLISFDGYY NEASHEPSTS 60 TGSLARRLFH EYRQSVIPLQ NGHIPSMAFM NNLPYLEIQT QDIQRLASND AQRLFYQEAR 120 IQTVIFMGCR SGEIELGLTY DAANMKVEAS LRDWFPEDFS RKTSPVNSDY LRPPPPPSSS 180 SSSLRSLDSP QNASEYSSLL FPLIPKPSTT TDAVNVPLHT LLAPVTTAET TTNMIHQQQQ 240 EPLFRNRERE EEVMTQAILA VLSMSSSPSS PQRKGKATAF KRYYCVATGG GGSGRAPQPP 300 SVRRQSMMKR AISFYNRLNI NWRERFPREN ATGGGSDGIG GSGGGRGPTA TQLHHMISER 360 KRREKLNESF QALRSLLPPG TKKDKASVLT IARDHLTSLQ GDISKLLERN RELEAKIAGE 420 REMENFLQAD ERFNVRIIHI PESTSRERLL DLRIAHRGDN IGADDLIIRL LEFLKQINNV 480 SLVSIDGKTR AREDGVTSVV LVSLRLKVEG ECDESAFQEA IRRVVADLAH * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 358 | 363 | ERKRRE |
2 | 359 | 364 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00012903001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619569.1 | 0.0 | PREDICTED: putative transcription factor bHLH041 | ||||
Refseq | XP_013673259.1 | 0.0 | putative transcription factor bHLH041 | ||||
Refseq | XP_022569086.1 | 0.0 | putative transcription factor bHLH041 | ||||
Swissprot | Q9LTS4 | 0.0 | BH041_ARATH; Putative transcription factor bHLH041 | ||||
TrEMBL | A0A078G7U1 | 0.0 | A0A078G7U1_BRANA; BnaA02g08430D protein | ||||
STRING | Bo2g032920.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7060 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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