PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00010055001
Common NameGSBRNA2T00010055001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 341aa    MW: 38126.2 Da    PI: 7.687
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00010055001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.81.2e-143169241
                  TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                         ++k+C+C++skClk+YC+Cfa+g+ C++ C C dC+N+++
  GSBRNA2T00010055001 31 KQKRCRCRQSKCLKLYCDCFASGVLCND-CDCADCHNNTD 69
                         79**************************.********987 PP
2TCR47.34.2e-15113148439
                  TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          +gC+Ck++kClkkYCeCf+a++ Cs +CkC +C+N 
  GSBRNA2T00010055001 113 RGCKCKRTKCLKKYCECFQANALCSYNCKCINCENV 148
                          79*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-153070IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.62631150IPR005172CRC domain
PfamPF036382.1E-113267IPR005172CRC domain
SMARTSM011149.4E-15110151IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11113147IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKSPTNLLLI FSGEREGNNN TDHQEGVTGR KQKRCRCRQS KCLKLYCDCF ASGVLCNDCD  60
CADCHNNTDN SYLREAAVLN LLDRNPNAFN GKPPSFLINK QAAADTKHGL LSRGCKCKRT  120
KCLKKYCECF QANALCSYNC KCINCENVSA LGATNRHNVG FNTPDSLICA PQSSLQQWNS  180
CPAPLSSMPD NYVLDSLESP MYSSPKLPYR KKRSRLGCTT PKLVPDLGDL RSLLLAASES  240
ATANAGLQDK NSICIKPDDK ELWNESESGI VEEEDIQSCG RLIQLIDAQY NDEVDPQTKT  300
IFPERDAYME QERAVLETFR DCLHKYMKVG FKKGTNYYHF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-21301489121Protein lin-54 homolog
5fd3_B6e-21301489121Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00010055001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022549800.10.0protein tesmin/TSO1-like CXC 8
SwissprotQ700D01e-123TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLA0A078G4690.0A0A078G469_BRANA; BnaA01g28180D protein
STRINGBra021165.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.11e-90Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]