PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00009476001 | ||||||||
Common Name | GSBRNA2T00009476001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 276aa MW: 31181.3 Da PI: 4.4098 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k+Fs + +L H++ H GSBRNA2T00009476001 77 FTCRFCNKRFSASQSLGGHMNAH 99 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-6 | 73 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.74E-7 | 74 | 103 | No hit | No description |
PROSITE profile | PS50157 | 10.741 | 77 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MSSGSSSVVQ PEKCNDINVA VEESREKATE NNNSGLGSDP QEVMSERRIE NPSRGYSAVR 60 TENGIMQHYT SETNKIFTCR FCNKRFSASQ SLGGHMNAHK RELQWERKRK EMEQMEQEFH 120 FQWMLSQYSQ GDLSNDNNLG NISEPFKRIC TGLYPSFNSG LMDMNMTVVP RMAPTGFFSG 180 NTFTNGFFSG GLEPMPSYNN YPPMLPRNVP PFPPHRTTNL PSYWYPQENV LNEEDVILKL 240 GNDNIVEIDD DDDDDDAVDQ PEEGTSKSWG ADLSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00009476001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013689744.1 | 0.0 | uncharacterized protein BNACNNG49940D | ||||
TrEMBL | A0A078G2U1 | 0.0 | A0A078G2U1_BRANA; BnaA09g03920D protein | ||||
STRING | Bo9g010580.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 2e-70 | C2H2 family protein |
Publications ? help Back to Top | |||
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