PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00009476001
Common NameGSBRNA2T00009476001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 276aa    MW: 31181.3 Da    PI: 4.4098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00009476001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-057799123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C  C+k+Fs + +L  H++ H
  GSBRNA2T00009476001 77 FTCRFCNKRFSASQSLGGHMNAH 99
                         89******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.3E-673102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.74E-774103No hitNo description
PROSITE profilePS5015710.74177104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSSGSSSVVQ PEKCNDINVA VEESREKATE NNNSGLGSDP QEVMSERRIE NPSRGYSAVR  60
TENGIMQHYT SETNKIFTCR FCNKRFSASQ SLGGHMNAHK RELQWERKRK EMEQMEQEFH  120
FQWMLSQYSQ GDLSNDNNLG NISEPFKRIC TGLYPSFNSG LMDMNMTVVP RMAPTGFFSG  180
NTFTNGFFSG GLEPMPSYNN YPPMLPRNVP PFPPHRTTNL PSYWYPQENV LNEEDVILKL  240
GNDNIVEIDD DDDDDDAVDQ PEEGTSKSWG ADLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00009476001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013689744.10.0uncharacterized protein BNACNNG49940D
TrEMBLA0A078G2U10.0A0A078G2U1_BRANA; BnaA09g03920D protein
STRINGBo9g010580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.12e-70C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]