PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00009475001 | ||||||||
Common Name | GSBRNA2T00009475001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 402aa MW: 42596.8 Da PI: 4.1564 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 189 | 211 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k F+++ L H++ H GSBRNA2T00009475001 189 FSCPTCKKGFPSSQALGGHQNAH 211 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.93E-6 | 186 | 217 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-4 | 187 | 216 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.572 | 189 | 216 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.6E-7 | 189 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 191 | 211 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MSSSSSSVFQ PKTCNEIIVA VEESMEKAAE SQVVSSASSS ATQPEKCNDV TVAVEESMEK 60 ATENQAVSSD GSSAAPQPEK TNDVTMAVEE AKEMAAENQV VSSAGSSAAP QPNDIIVAVE 120 GDKEVATENQ IVPYTGSPAP QAEQCTDIVI VATENNNPGT ENPSLMGSGA VPTGSQILQL 180 YPPRSNKIFS CPTCKKGFPS SQALGGHQNA HKQEREWEKK RKNMEQEYPG FAFLNPNIDN 240 PLMFFLGGYS EDALTHENHL GIPLDDAFKR RFARNHPSVN NGSSDMNITA VPRVAPTGFF 300 AGNTPTTNGS SSGGLGPPYN SYPPMLPRNF PPFPPPQTNN LPSGLYPQQE NVLNEVNFIS 360 EIGKGKNIIE IDDDDDDDAD AGADDGPIAG TSKSWGADLS L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00009475001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009111739.1 | 0.0 | PREDICTED: uncharacterized protein LOC103837161 | ||||
TrEMBL | A0A078G4V7 | 0.0 | A0A078G4V7_BRANA; BnaA09g03910D protein | ||||
STRING | Bra036609.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 3e-62 | C2H2 family protein |
Publications ? help Back to Top | |||
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