PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00008474001 | ||||||||
Common Name | GSBRNA2T00008474001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 136aa MW: 15333.9 Da PI: 8.9027 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.5 | 7.5e-11 | 18 | 117 | 1 | 82 |
EEEE-..-HHHHT.T-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHH CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkan 72 f+k+l dv s +rl++p + + ++ ++ ++ + +l d+ +++W v l+ + g+ y l GW++ vkan GSBRNA2T00008474001 18 FEKTLFETDVKPSqSRLSIPFHKLIRNdfltlaesriieediSNREKMGLGAVLVDQGSKKWGVFLKRWEMNGSwnYALVCGWNDVVKAN 107 677777777776557778887777777777777777777666444445567999************6644444448************** PP T--TT-EEEE CS B3 73 gLkegDfvvF 82 gLk+gD++ + GSBRNA2T00008474001 108 GLKDGDSISL 117 ******9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 4.8E-43 | 2 | 105 | IPR005508 | B3 domain-containing protein |
Gene3D | G3DSA:2.40.330.10 | 1.0E-21 | 13 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.49E-20 | 13 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.80E-13 | 17 | 128 | No hit | No description |
PROSITE profile | PS50863 | 11.97 | 38 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MIQLLRNTKG AADPMLIFEK TLFETDVKPS QSRLSIPFHK LIRNDFLTLA ESRIIEEDIS 60 NREKMGLGAV LVDQGSKKWG VFLKRWEMNG SWNYALVCGW NDVVKANGLK DGDSISLWSF 120 RCRGVLCFAL VPLPM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00008474001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013674137.1 | 1e-94 | B3 domain-containing protein At3g25182-like | ||||
Swissprot | Q9LRX6 | 7e-61 | Y3485_ARATH; Putative B3 domain-containing protein At3g24850 | ||||
TrEMBL | A0A078ISV2 | 1e-94 | A0A078ISV2_BRANA; BnaA09g14220D protein | ||||
TrEMBL | A0A397XU38 | 1e-94 | A0A397XU38_BRACM; Uncharacterized protein | ||||
STRING | Bra027159.1-P | 3e-94 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM273 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05930.1 | 4e-42 | B3 family protein |
Publications ? help Back to Top | |||
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