PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007301001
Common NameGSBRNA2T00007301001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 224aa    MW: 24402.4 Da    PI: 7.1591
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007301001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.51.2e-2083117135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  GSBRNA2T00007301001  83 CANCDTTSTPLWRNGPSGPKSLCNACGIRFKKEER 117
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-2077129IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.2277113IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-1381117No hitNo description
Gene3DG3DSA:3.30.50.101.2E-1781117IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.15E-1482114No hitNo description
PROSITE patternPS00344083108IPR000679Zinc finger, GATA-type
PfamPF003203.8E-1883117IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGLSMFFSSE NDVIHHHSSP YASVDCTLSL GTPSTRLCND DDDRRFSTHT SNNISNALGS  60
WDFLHGGKKA GGGGGNNLGA RRCANCDTTS TPLWRNGPSG PKSLCNACGI RFKKEERRAS  120
AAGNSTSGGG LTAFGVPASD HHGGADYYYN NNSNNNHYYA SSSPWTHHQQ QNTQRVPHYS  180
PANNNEYSFV DDVRESHDIT TDPFLSWRLN VADRTRLVHD CTM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573GGKKAGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout the inflorescence meristem (IM) and early stages of floral primordia. In developping flowers, restricted to the innert hree whorls, speci fi cally in the petals, stamens, and carpels. Within the stamens, mostly detected in the anther locules as well as in the vascular strands. In carpels, mainly present in ovules. {ECO:0000269|PubMed:23335616}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007301001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893730.0AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143303.11e-162PREDICTED: GATA transcription factor 19-like
RefseqXP_013665385.11e-162GATA transcription factor 19-like
SwissprotQ6QPM23e-94GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A078JVF91e-165A0A078JVF9_BRANA; BnaAnng34860D protein
STRINGBra011695.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-80GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]