PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00007154001
Common NameGSBRNA2T00007154001, LOC106348639
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 607aa    MW: 69477 Da    PI: 6.9707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00007154001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.31.3e-1599180286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 
                          W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ y + +++ + +  ++ ++ ++++f++++
  GSBRNA2T00007154001  99 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERSYFNSNNNTNAHhmSNYNKGNYRLFSEVD 180
                          ********************998.....9*************************999988888877776634566667788887765 PP
2trihelix101.37.8e-32447543186
             trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                          rW+++evlaLi++rr+m +   +              ++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+t
  GSBRNA2T00007154001 447 RWPRDEVLALINIRRSMSSMNDDHHrkddiplpssstKAVPLWERISKKMLEVGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRT 535
                          8**************776555543233455566666699*******************************************8.9***** PP

             trihelix  79 cpyfdqle 86 
                          cpyf+ql+
  GSBRNA2T00007154001 536 CPYFHQLT 543
                          ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1097163No hitNo description
PROSITE profilePS500905.48298150IPR017877Myb-like domain
PfamPF138371.0E-19446544No hitNo description
CDDcd122031.96E-26446523No hitNo description
PROSITE profilePS500906.934447516IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MFDGGVPEQI HRFIASPQPP PPLPPHQPAA ERSLPFPVSF ASFNTNHQAH MLNLDGPKII  60
HHHHHHHHHD IKDSGATSEW MGHTDHDGDN HRHHHHHPWC SDEVLALLRF RSTVENWFPE  120
FTWEHTSRKL AEVGFKRSPQ ECKEKFEEEE RSYFNSNNNT NAHHMSNYNK GNYRLFSEVD  180
EFYHHGHAGG EHVVSSEVGD NQNKRNSSLE GKGNVEETGQ DLLEDKTDHQ DQGQVDESSM  240
RDKMNSIDNV GKVGNVEEDA KSSSSASLMM IMRDNKKRKR KKKKERFGVL KGFCEGLVSN  300
VIAQQEEMHK KLLEDMVEKE EEQISREEVW KKQEMERLNK ELEIRAQEQA MASDRNTSII  360
KFISKFTDHN NHDDGNDKVQ SPNPSQDSSS LVLSKPQRSR KCQTSSSLQT LTPQNPSLEP  420
TSPKTLKTKT KNPKPPKGDE QGDIGKRWPR DEVLALINIR RSMSSMNDDH HRKDDIPLPS  480
SSTKAVPLWE RISKKMLEVG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH  540
QLTALYSQPS TGTTTTVTAD TSVEELETRP EENRVGSGDS DIPTAMHVDG DSEKSNEQFS  600
GFDLAF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KKRKRK
2275282KKRKRKKK
3275283KKRKRKKKK
4276284KRKRKKKKE
5277281RKRKK
6277283RKRKKKK
7277284RKRKKKKE
8279284RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00007154001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643859.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A078IRA50.0A0A078IRA5_BRANA; BnaC07g49430D protein
STRINGBo7g093250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]