PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003490001
Common NameGSBRNA2T00003490001, LOC106449549
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 333aa    MW: 36578.9 Da    PI: 6.7952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003490001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08253293954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  GSBRNA2T00003490001 253 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 293
                          69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-13249308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-11250298No hitNo description
SMARTSM003535.9E-13250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-12252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEGLESVYAQ AMYGTNRTME HQGSDLIWGG NGLIPRELCS SSSSSHQLIN PNRGSCFMSD  60
LGVIAEIQHQ QHVGNRAASI DPSSLECLLS ATTNTSTEDD EGISALFSDC QTLWSFGGGI  120
SSAESENREI TTETTTKPKS LKRNRDETGS HFRLVHHPQD DSDKGSFKLI YDENQSKSKK  180
PRTEKGGGSS NISFGHSASL SDNAEPDAEA IAQMKEMIYR AAAFRPVNFG LETVEKPKRK  240
NVKISTDPQT VAARQRRERI SEKIRVLQTL VPGGTKMDTA SMLDEAANYL KFLRAQVKAL  300
ENLRPKLDPT NLSFSSPLFH PSFLPMQNPN QI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258RQRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.239551e-143vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003490001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886171e-172AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBankAP0013051e-172AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBankBT0203641e-172BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBankCP0026861e-172CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145485.10.0PREDICTED: transcription factor bHLH87
RefseqXP_013746748.10.0transcription factor bHLH87
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A078IPX30.0A0A078IPX3_BRANA; BnaA05g36660D protein
TrEMBLM4ER520.0M4ER52_BRARP; Uncharacterized protein
STRINGBra031275.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]