PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00002041001 | ||||||||
Common Name | GSBRNA2T00002041001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 230aa MW: 24502.3 Da PI: 8.5958 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.3 | 3.3e-38 | 30 | 90 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk+ k+s GSBRNA2T00002041001 30 QQEQLPCPRCNSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKSAKRS 90 68999***************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-30 | 28 | 88 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.1E-33 | 32 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.143 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MMMSDSGESR QIAMRPHGVI TGLPPTASEQ QEQLPCPRCN STNTKFCYYN NYNFSQPRHF 60 CKSCRRYWTH GGTLRDIPVG GGTRKSAKRS RTCSGTSSVP LQATPVLFPH SSTSNGVSHT 120 VTAPLENDGK GSALSLSGNF TSLLNQNNAA HGTGSVIGIG LGSSFDDVSF GLGRAVWPFS 180 TVGDSATTNV PGVAVPYTWQ FEGLESSNAV EYFAWPDLSI TTPGRNSLK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.8552 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in the whole plant. {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:8718629}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00002041001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189379 | 1e-142 | AC189379.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013602377.1 | 1e-170 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q39088 | 5e-99 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A078FZK4 | 1e-169 | A0A078FZK4_BRANA; BnaC08g21910D protein | ||||
TrEMBL | A0A0D3DRY3 | 1e-169 | A0A0D3DRY3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GAI9 | 1e-169 | A0A3P6GAI9_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g079910.1 | 1e-169 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2286 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 1e-101 | OBF binding protein 1 |
Publications ? help Back to Top | |||
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