PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G526668_P02 | ||||||||
Common Name | ZEAMMB73_056372, Zm.130863 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 322aa MW: 33035.1 Da PI: 7.4199 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.7 | 5.9e-15 | 149 | 195 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs +++Lr+llP+ K +Ka+ L +++e++k+L GRMZM2G526668_P02 149 RSHSEAERRRRQRINSHLARLRSLLPNT-----SKTDKASLLAEVIEHVKEL 195 78*************************7.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.269 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.28E-15 | 149 | 198 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-15 | 149 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-12 | 149 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 150 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-14 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.2E-4 | 244 | 284 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MWEGGGFHGS HEALLLQAAG SGAADYGHGA GPALLPWLGP AAGAAPGFSY MAPHHAQPGP 60 SGAEAAASPF GFGGGGYSDG GVGGQFGVFG GPETALPAPH GLAAAAGGGT SAMQHGSRMV 120 SGLLGTLQME LGRMAAKEIM DAKALAASRS HSEAERRRRQ RINSHLARLR SLLPNTSKTD 180 KASLLAEVIE HVKELKRQTS AVLDVEGEEA AAARQRLQLL PTEADDLAVD ATEDGEGRLV 240 VRASLCCEDR AGLIPDIARA LAALRLRAHR AEIATLGGRV RNEALRGVMD CKTASSDTSS 300 SSNGGGSMKR QRMSGAHEQG SL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G526668 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G526668_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU965531 | 1e-174 | EU965531.1 Zea mays clone 286711 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678584.1 | 1e-172 | transcription factor AIG1 | ||||
Swissprot | Q9S7Y1 | 2e-60 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1D6Q1G9 | 1e-171 | A0A1D6Q1G9_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G526668_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 2e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G526668_P02 |
Publications ? help Back to Top | |||
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