 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GRMZM2G435824_P01 |
| Common Name | LOC100285286, ZEAMMB73_908157 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
| Family |
NAC |
| Protein Properties |
Length: 349aa MW: 38554.4 Da PI: 6.4156 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G435824_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 167.7 | 3.9e-52 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+ppGfrFhPtdeel+ +yLkkkv +k+el evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g Wkatg+d
GRMZM2G435824_P01 10 VPPGFRFHPTDEELLLYYLKKKVGFEKFEL-EVIREVDLNKIEPWELQEtcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGLWKATGRD 100
69***************************9.99**************953433332566********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
k + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
GRMZM2G435824_P01 101 KCIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139
****9.8999****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFELE VIREVDLNKI EPWELQETCR 60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGLWKATGRD KCIRTSYRKI GMRKTLVFYR 120
GRAPHGQKTD WIMHEYRLED ADDDDAQGGT SEDGWVVCRV FKKKCFFKIG GGEGSTTSSQ 180
GADAGGHLAT MSPPLGGHHD LAYMHPHPYY HHAASYYSQM QAPGPHATAY SHHVQVQDLL 240
TNHRPTDDDG AGTGYDFSGL PVENQPGGGL DVGSSDGVAT DDGGQLAGER RDQTTGTAAD 300
HQWQAMDGFS NGGSAEVQQM TGAQRGGEMD LWGYGRLCGH AEETNKHKD
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-52 | 10 | 164 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-52 | 10 | 164 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-52 | 10 | 164 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-52 | 10 | 164 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 6e-52 | 10 | 164 | 17 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 6e-52 | 10 | 164 | 17 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}. |
| Uniprot | TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU971542 | 0.0 | EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds. |
