PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G430849_P01
Common NameZm.41722
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 395aa    MW: 42079.8 Da    PI: 7.3831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G430849_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44e-51211481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++PwdLp+k+  ++ e+yfFs+rd+ky++g r+nra+ sgyWkatg+dk++
  GRMZM2G430849_P01  21 LPPGFRFHPTDEELILHYLRNRAASAPCPV-PIIADVDIYKFDPWDLPAKALYGDGEYYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPI 111
                        79****************************.88***************77777899************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ +ge vg+kk Lvfykgr p+g+kt+W+mheyrl
  GRMZM2G430849_P01 112 HDAaTGEGVGVKKALVFYKGRPPRGSKTNWIMHEYRL 148
                        *9878889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-638185IPR003441NAC domain
PROSITE profilePS5100559.67521185IPR003441NAC domain
PfamPF023651.3E-2622148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTMAATTTMM SAAAQAATSQ LPPGFRFHPT DEELILHYLR NRAASAPCPV PIIADVDIYK  60
FDPWDLPAKA LYGDGEYYFF SPRDRKYPNG IRPNRAAGSG YWKATGTDKP IHDAATGEGV  120
GVKKALVFYK GRPPRGSKTN WIMHEYRLAA VAGCTSPLAA YRPPSKFRNV SMRLDDWVLC  180
RIYKKSGHAS PMVPPLADYE HLDRDGPSPG GFFDDYFCGS TSLYAAAAPA IGGGAAAAGT  240
TNTTTTPAVV MQQHQQPAAL PRLPKIPSIS ELLWDEYALA QILDPPADVA ADHASFAVHP  300
SLNQLLAVGD DGSDLMMFSP PPAAAAGGKR KAMVAMNMSP ADECAATAHQ HQSPAAKRLN  360
GGSCFDDAPQ PASGLPATMS SVLGGGLNHH MLPQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-702119017170NO APICAL MERISTEM PROTEIN
1ut4_B8e-702119017170NO APICAL MERISTEM PROTEIN
1ut7_A8e-702119017170NO APICAL MERISTEM PROTEIN
1ut7_B8e-702119017170NO APICAL MERISTEM PROTEIN
3swm_A8e-702119020173NAC domain-containing protein 19
3swm_B8e-702119020173NAC domain-containing protein 19
3swm_C8e-702119020173NAC domain-containing protein 19
3swm_D8e-702119020173NAC domain-containing protein 19
3swp_A8e-702119020173NAC domain-containing protein 19
3swp_B8e-702119020173NAC domain-containing protein 19
3swp_C8e-702119020173NAC domain-containing protein 19
3swp_D8e-702119020173NAC domain-containing protein 19
4dul_A8e-702119017170NAC domain-containing protein 19
4dul_B8e-702119017170NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G430849
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G430849_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0679140.0BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds.
GenBankEU9713990.0EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151613.10.0uncharacterized protein LOC100285247
TrEMBLA0A3L6E1P10.0A0A3L6E1P1_MAIZE; NAC transcription factor ONAC010
STRINGGRMZM2G430849_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-81NAC-like, activated by AP3/PI