PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G427087_P01 | ||||||||
Common Name | LOC100279100, THX31, ZEAMMB73_471837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Trihelix | ||||||||
Protein Properties | Length: 206aa MW: 22628.8 Da PI: 11.707 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.1 | 5.5e-09 | 18 | 78 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + + GRMZM2G427087_P01 18 CWTTDETLALARAYTARRLAVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSNR 78 8*********************************99865....689*************988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-7 | 17 | 79 | No hit | No description |
PROSITE profile | PS50090 | 6.26 | 19 | 71 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-4 | 19 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MASPSPARAS GRRVPPPCWT TDETLALARA YTARRLAVGR EHLTSADWAA VAAAAPSKTA 60 RQCRHKVEKL RRRLRSNRRR PCPLLDAIDL LDVPSPPFFS KSQSRSTSRS SSPPPPAAAI 120 SSPSPPSPPA SPPRKRRRDD AGDEDGVSDV VGALRAIGEG FLRAEERRME AARETQRMRM 180 EMALRHLDAQ RRLMDALVGR IVDALD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 74 | KLRRRLR |
2 | 69 | 75 | LRRRLRS |
3 | 133 | 137 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85715 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G427087 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G427087_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066046 | 0.0 | BT066046.2 Zea mays full-length cDNA clone ZM_BFb0189B18 mRNA, complete cds. | |||
GenBank | DQ245467 | 0.0 | DQ245467.1 Zea mays clone 15810 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001145617.2 | 1e-141 | uncharacterized protein LOC100279100 | ||||
TrEMBL | A0A3L6G695 | 1e-140 | A0A3L6G695_MAIZE; Uncharacterized protein | ||||
TrEMBL | K7UKN9 | 1e-140 | K7UKN9_MAIZE; FRIGIDA interacting protein 2 | ||||
STRING | GRMZM2G427087_P01 | 1e-141 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13911 | 20 | 24 | Representative plant | OGRP13172 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G427087_P01 |