PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G414252_P01 | ||||||||
Common Name | bHLH20, LOC100217048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 26394.9 Da PI: 9.6576 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 173 | 213 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L GRMZM2G414252_P01 173 ARLRRERISERIRALQRLVPGG-----TKMDTASMLDEAIQYVKFL 213 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.069 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-14 | 165 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-15 | 168 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.6E-14 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-6 | 174 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.70E-6 | 186 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEFDLLNYYS PEEAQLELMN TMLQLEQLTA LDGHRQSAMA PASPPISPMQ THHAGPHSFS 60 PLPHTSTTTT TTATATGYPK KQHAPPRAVY GAATSSGLEH HHLQLQDGGA LQAGPSSAAA 120 ASADAMREAI FRIAALQPVE DQTTTGPEPE AAVRRAPKRR NVRVSKDPQS VAARLRRERI 180 SERIRALQRL VPGGTKMDTA SMLDEAIQYV KFLKSQLQSL QRAAASRHAP WQYALLPHAD 240 ML |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 159 | RAPKRR |
2 | 173 | 178 | RLRRER |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G414252 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G414252_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037825 | 0.0 | BT037825.1 Zea mays full-length cDNA clone ZM_BFb0198D08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001136892.1 | 1e-176 | uncharacterized protein LOC100217048 | ||||
TrEMBL | A0A3L6FYU7 | 1e-174 | A0A3L6FYU7_MAIZE; Transcription factor HEC1 | ||||
TrEMBL | B4FL37 | 1e-174 | B4FL37_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G414252_P01 | 1e-175 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 | Representative plant | OGRP761 | 15 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 8e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G414252_P01 |
Entrez Gene | 100217048 |