PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G333591_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 265aa    MW: 28797.1 Da    PI: 10.3018
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G333591_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.42.8e-24193257171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+ fl+ll+ ++ giv+ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  GRMZM2G333591_P01 193 RYDSSLGLLTK-FLNLLKGAPGGIVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 257
                        6899****985.8*********************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-25191259IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-32193257IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.4E-21195257IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.45E-14195255IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTLKRTLQSI CLLTVHANTT TSVVLQAQGS LDRRGVFSLD THSPSVCLLI QLEKAATEEG  60
GVTPSVYSHK EPVHLAKKEK QKLQVWSRIM PCKESFAWAM IPLFEAPILT RTFLLQLKRK  120
HNDRTENEAT ESNDWMSPGY ANAGSSPVPT PPSGKGLKAS TKPKATKGQK SGPRTPLGFG  180
SPGNPSTPVG GCRYDSSLGL LTKFLNLLKG APGGIVDLNN AAETLEVQKR RIYDITNVLE  240
GIGLIEKKLK NNIRWKGVDD SRPGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-23182258274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.538020.0cell lignification| ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G333591
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G333591_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9655380.0EU965538.1 Zea mays clone 286746 transcription factor E2F2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130952.11e-97uncharacterized protein LOC100192057
TrEMBLA0A1D6M7Z20.0A0A1D6M7Z2_MAIZE; Exosome complex exonuclease RRP46-like protein
STRINGGRMZM2G333591_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.35e-31E2F transcription factor 1