PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G317596_P01
Common NameEREB165, LOC103630736
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 290aa    MW: 31026.5 Da    PI: 6.9431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G317596_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.5e-18129180256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+++AeIrd +    r +r++lg+f ta++Aa a+++a+++++g+
  GRMZM2G317596_P01 129 SYRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATADDAALAYDKAALRMRGP 180
                        69*******.**********433...24**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-31129187IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-22129189IPR016177DNA-binding domain
PROSITE profilePS5103223.209129187IPR001471AP2/ERF domain
PfamPF008471.2E-13129179IPR001471AP2/ERF domain
SMARTSM003806.2E-34129193IPR001471AP2/ERF domain
CDDcd000185.22E-25130187No hitNo description
PRINTSPR003675.4E-10130141IPR001471AP2/ERF domain
PRINTSPR003675.4E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAIGAPDDSR QRRPADHAAN ILENVWATIM TGSATPASSS TAASSSEVGE ERPPDEAILE  60
RLPSLGRWIS MGAEEWDELL LGGAARASDA AASGRELPAA SPANQEADRL GHHRASSSKA  120
ASAAAACKSY RGVRRRPWGK FAAEIRDTRR RGARVWLGTF ATADDAALAY DKAALRMRGP  180
RACLNFPLDV VQRALADGGG RAETTPRVLR RKRRRANHDD AAGGDDTRSD GSVAAATARD  240
PTTTMVSFAC AKKDDQVMTP LMAQERSVSD PGAVIEFEDI GGEYWDYLFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-28125190166ATERF1
3gcc_A6e-28125190166ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210214RKRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G317596
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G317596_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277100.0KJ727710.1 Zea mays clone pUT5649 AP2-EREBP transcription factor (EREB165) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020395758.10.0ethylene-responsive transcription factor ERF094
TrEMBLK7VMM60.0K7VMM6_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G317596_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-19ethylene response factor 1