PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G305362_P01
Common NameLOC103635104, ZEAMMB73_350135, Zm.27240
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 533aa    MW: 57191.2 Da    PI: 6.5627
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G305362_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.46e-21119233186
           trihelix   1 rWtkqevlaLiearremeerlrrgk............................lkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                        +Wt+++v++Li ++ +++++ + ++                            +kk++W++vs +m+++gf +sp+qC++k+++lnkryk++
  GRMZM2G305362_P01 119 KWTDDMVRLLISVVYSVGDDWEGAAmpggagggkasragssghghghaaaaqqQKKGKWKSVSHAMMDKGFVVSPQQCEDKFNDLNKRYKRV 210
                        7***********99955555554433444455555555666666666666776*************************************** PP

           trihelix  65 kegekkr.tsessstcpyfdqle 86 
                         +  +++ +++++++++++d ++
  GRMZM2G305362_P01 211 VDLLGRGrACRVVENHALLDAID 233
                        ****99967*******9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-17117259No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MGRGDGEGGM ATRGGVVGSG AMLGLDMHLA AQQMHPAAAA FQHQQDHHHD GFQLQQPPPP  60
PSFSPYSNTS SSRVVVSAAT VGHDEDTVGN GCCGKGGVVV QQQQQQQMAA AGCPWTRMKW  120
TDDMVRLLIS VVYSVGDDWE GAAMPGGAGG GKASRAGSSG HGHGHAAAAQ QQKKGKWKSV  180
SHAMMDKGFV VSPQQCEDKF NDLNKRYKRV VDLLGRGRAC RVVENHALLD AIDELTPKAK  240
DEARKLLSSK HLFFREMCAY HNSGVAGGSH LPPHAGGGAA GDAACLHHPP PVPVAGAASS  300
AARHYQAAPS PPCMKDSSAD VADDEDDSDA VSDNGEEDED DYDEEDDGHM YHSHLTSRQH  360
SGGGRRRGKR EHGEDSAAAE DLEDEAAGGG KRARTGAAPD PSAMLQQLKS ELAAAAAAAM  420
DPQQARCWVR RRAVEVEEQQ ILLESHAYDL ERQRLKWDRF RANKERDMER ARLQNDRLRI  480
QSRRLLLMLR HKEVELDMAE ANSSSVDHHP GASPLAAHQQ TIGSSPSTAG HPN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.383600.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G305362
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G305362_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-100CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655870.10.0uncharacterized protein LOC103635104
TrEMBLA0A3L6DT840.0A0A3L6DT84_MAIZE; Uncharacterized protein
STRINGGRMZM2G305362_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Representative plantOGRP1284445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-48sequence-specific DNA binding transcription factors