PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G175232_P01 | ||||||||
Common Name | LOC100382234, Zm.36608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 33296.9 Da PI: 5.3685 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++G g+W+t+++ g+ R++k+c++rw +yl GRMZM2G175232_P01 20 KGLWSPEEDEKLYNHIIRHGVGCWSTVPKLAGLQRCGKSCRLRWINYL 67 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ GRMZM2G175232_P01 73 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 117 899*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 15 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.418 | 15 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-29 | 17 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-12 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 20 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.49E-11 | 23 | 67 | No hit | No description |
PROSITE profile | PS51294 | 26.038 | 68 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 71 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-16 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-15 | 73 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-11 | 75 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MGRLSCGGGG GGGVQPKLRK GLWSPEEDEK LYNHIIRHGV GCWSTVPKLA GLQRCGKSCR 60 LRWINYLRPD LKRGSFSQQE EDLIVALHEI LGNRWSQIAS HLPGRTDNEI KNFWNSCLKK 120 KLRQRGIDPA THKPVAAAEA SAALPDARDH DREPGGAGAG ADADGLAQQS KQPAAAVFDP 180 FPVVDFGFDL SGGGGVAALY GGPYDAAAGK ASADDGGFVA DYSSVLDVSE NLGYGESSSN 240 SSNWGNGAEM GNAAAAVLDG EVLHWAKPEP YTELEQRSAG QAAADDDALH HRFLLPCGQE 300 QSLAHLDFGL EYF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-29 | 4 | 122 | 11 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 117 | 123 | LKKKLRQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.36608 | 0.0 | shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G175232 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G175232_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT063597 | 0.0 | BT063597.1 Zea mays full-length cDNA clone ZM_BFc0084D02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168460.1 | 0.0 | uncharacterized LOC100382234 | ||||
Swissprot | P20027 | 1e-113 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | C0P5M8 | 0.0 | C0P5M8_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G175232_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-73 | myb domain protein 86 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G175232_P01 |
Entrez Gene | 100382234 |