PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G166041_P01
Common NameZEAMMB73_861876, Zm.26201
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 269aa    MW: 28268.6 Da    PI: 10.2085
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G166041_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-18135189256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++t+ q + Le+ F+ ++ +s+ e++eLA++ gL+ rqV vWFqNrRa+ k
  GRMZM2G166041_P01 135 RKKLRLTAAQATLLEDSFRAHNILSHGEKQELARQAGLSARQVEVWFQNRRARTK 189
                        678899***********************************************98 PP
2HD-ZIP_I/II107.69.4e-35135224190
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                        +kk+rl++ q++lLE+sF++++ L++ +K+elar+ gl++rqv+vWFqnrRARtk+kq+E+d++ L+r++ +l+++n+rL+++ ++Lr++
  GRMZM2G166041_P01 135 RKKLRLTAAQATLLEDSFRAHNILSHGEKQELARQAGLSARQVEVWFQNRRARTKLKQTEVDCDLLRRWCARLSDDNDRLRRDLADLRRA 224
                        69************************************************************************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17107192IPR009057Homeodomain-like
PROSITE profilePS5007116.795131191IPR001356Homeobox domain
SMARTSM003896.0E-14133195IPR001356Homeobox domain
SuperFamilySSF466893.81E-18133200IPR009057Homeodomain-like
PfamPF000461.9E-15135189IPR001356Homeobox domain
CDDcd000864.86E-13135192No hitNo description
PRINTSPR000314.2E-6162171IPR000047Helix-turn-helix motif
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
PRINTSPR000314.2E-6171187IPR000047Helix-turn-helix motif
SMARTSM003405.8E-11191234IPR003106Leucine zipper, homeobox-associated
PfamPF021835.6E-7191221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSSLTTAASS SSSMEEHCYS VSAEEVVGTH LSLGIGGGGG GGDKRMLTTL PPSRTVVQLF  60
GEVLSVQDGD EAQALRHHHT GRPTAASRKK KRRDAAAGGA SATDAAANGH HHQSKKTKTT  120
AARRDDGGGG GGGGRKKLRL TAAQATLLED SFRAHNILSH GEKQELARQA GLSARQVEVW  180
FQNRRARTKL KQTEVDCDLL RRWCARLSDD NDRLRRDLAD LRRAAAASAG LGAVVCCASC  240
GADRQLALAA AADNVLPSVA SPSHSPHLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892KKKRR
2183191RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.262014e-76pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G166041
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G166041_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054122e-53AP005412.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13.
GenBankAP0149582e-53AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-53CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679947.10.0putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX63e-48HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A1X7YHR40.0A0A1X7YHR4_MAIZE; Uncharacterized protein
STRINGGRMZM2G166041_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Representative plantOGRP1970022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-26homeobox protein 2