PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G165972_P02 | ||||||||
Common Name | LOC100280131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HSF | ||||||||
Protein Properties | Length: 384aa MW: 43268.5 Da PI: 5.0741 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104.6 | 8e-33 | 44 | 135 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+++++ d++++e+isw + gnsfvv+d++ fa +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+++l GRMZM2G165972_P02 44 FLTKTFDLVADPATDEVISWGRAGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDS---------WEFANEGFLRGQRHL 126 9****************************************************************998.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l+ ikr++ GRMZM2G165972_P02 127 LRLIKRRRP 135 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.35E-34 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.2E-37 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.5E-59 | 40 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.3E-30 | 44 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-19 | 44 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-19 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 83 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-19 | 95 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDLMLPVTVK EEWPPEEEEE EDVDADADAP RPMEGLHEVG PPPFLTKTFD LVADPATDEV 60 ISWGRAGNSF VVWDPHVFAA VLLPRFFKHN NFSSFVRQLN TYGFRKIDPD SWEFANEGFL 120 RGQRHLLRLI KRRRPAPPPP YLQASQSQGS CLEVGRFGGL DGEMERLRRD KSILLAEVVK 180 LRQEQQSTRA GMRAMEERLR HAEHKQVQMM GFLARAVQSP DLFQLLAQQQ ARRRELEGAA 240 LLSAASRKRR RPIGAAPANG GLQQQEEEQQ QGDDDDPTAT RALFAELDER GTTSELENLA 300 LNIQGLGKRR QDGSEKQGGR ARSQQQGGFE TAELTDDFWE ELLNEGMKGG AEAETLPPER 360 RRPAWYVDAL AQKLSSMSNN TTAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-25 | 42 | 133 | 18 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 132 | RLIKRR |
2 | 231 | 250 | RRRELEGAALLSAASRKRRR |
3 | 246 | 250 | RKRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G165972 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G165972_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055631 | 0.0 | BT055631.1 Zea mays full-length cDNA clone ZM_BFc0084J01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146536.1 | 0.0 | uncharacterized LOC100280131 | ||||
Swissprot | Q8H7Y6 | 1e-153 | HFA2D_ORYSJ; Heat stress transcription factor A-2d | ||||
TrEMBL | B8A239 | 0.0 | B8A239_MAIZE; Heat stress transcription factor A-6b | ||||
TrEMBL | K0D9U3 | 0.0 | K0D9U3_MAIZE; HSF13 HSF type transcription factor (Fragment) | ||||
STRING | GRMZM2G165972_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 2e-87 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G165972_P02 |
Entrez Gene | 100280131 |