PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G163914_P02 | ||||||||
Common Name | LOC100383571, ZEAMMB73_992943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 612aa MW: 66805.7 Da PI: 5.8317 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.4 | 2.1e-47 | 11 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrF+Ptdeelv +yLk+k++g+ + i++vd+ +ePw+Lp k +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd+ GRMZM2G163914_P02 11 LPVGFRFRPTDEELVLHYLKPKIAGRAHADLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKDR 102 79*************************888788***************5346667888********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + s+ g+l+g+kktLvf++grap+g++t W+mheyr GRMZM2G163914_P02 103 LIRSRpAGTLIGVKKTLVFHRGRAPRGHRTAWIMHEYRT 141 ****989999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-53 | 9 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.705 | 11 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-26 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MQPPPQLPAA LPVGFRFRPT DEELVLHYLK PKIAGRAHAD LLLIPDVDLS ACEPWELPAK 60 ALIRSDDPEW FFFAPLDRKY PGGHRSNRST AAGYWKATGK DRLIRSRPAG TLIGVKKTLV 120 FHRGRAPRGH RTAWIMHEYR TAEPQLPQGQ NGSFVLYRLF NKNEEESEAS DAADSPSTSS 180 PPIAPEVKTE NLSQPTSAKM SPHIATVSSN EPTSNQQGDV NLLDVLTQLP DLHPEQAFDG 240 FPTITSPMRP YTDHPFFGNA GDQDLSAYID SIISHQDLEG LLASPSLADM VEQATVNVEP 300 HPINVPVLDN SSNSNRLAEN SRGKVGSETL LLIKGTDGTG AAACSSSATK ILQDNTDDHT 360 GAQSNLASSA SAQVSHFYNQ YELQSAFVPE MEPPNSGTLC SAASPTPHPQ HLFNGVVASD 420 VFNGIQGWPA EPLTDPHQGN APRRIRLAHS IQRASVTEPV LTSDVEDEDE PGICYSADSS 480 SASNTEDYAN VFSQTMAGET MRIQRGGVIS TQVVSSTEKL QDFTFDEGTL LHGELHHGGN 540 LRQRRTEETR QDVRDGMQHS VHVTRVAVPS LRRKGEAAQI GSVVRLLLLV LLLVVIFVFV 600 GLWKCSSFRL LH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-43 | 5 | 162 | 14 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-43 | 5 | 162 | 14 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-43 | 5 | 162 | 14 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-43 | 5 | 162 | 14 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-43 | 5 | 162 | 14 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-43 | 5 | 162 | 14 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-43 | 5 | 162 | 14 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-43 | 5 | 162 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.86221 | 0.0 | ear| endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G163914 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G163914_P02 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067635 | 0.0 | BT067635.1 Zea mays full-length cDNA clone ZM_BFc0101L24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169690.1 | 0.0 | uncharacterized protein LOC100383571 | ||||
TrEMBL | C0PH66 | 0.0 | C0PH66_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G163914_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13413 | 25 | 29 | Representative plant | OGRP12749 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 3e-61 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G163914_P02 |
Entrez Gene | 100383571 |