PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G138455_P01 | ||||||||
Common Name | Zm.18635 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Dof | ||||||||
Protein Properties | Length: 450aa MW: 47264.1 Da PI: 6.6915 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.3e-39 | 108 | 167 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ GRMZM2G138455_P01 108 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 167 78999****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-31 | 104 | 165 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.2E-32 | 109 | 166 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.984 | 112 | 166 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 114 | 150 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MVAECHGGGG AAAGGGDFLI KLFGMTIPVP ECGDAKDLQQ SKSNRWTEQD QDSHGLETAP 60 APAHTDTSDP SPQPEVVDAE DPTETQQRPC NGDGDGDAAG QREKLKKPDK VLPCPRCNSM 120 DTKFCYFNNY NVNQPRHFCK NCQRYWTAGG AMRNVPVGAG RRKNKNAAAS HFFQRVRATN 180 ATVLSFGGHG GAPPAARLDL DLAEQLSHQL APVRSAGDAG RPCSEGSSSR DGNGSRSSVD 240 EAAANADDGS VQQHPGPASM NSSGATVWPP YSCAPAPAAY FPQGIAIPIY PAAPAYWGCM 300 VPGAWSLPWP VQHPSSSSSP TTTSAPSVVS SSGAADDSSS HALGKRPRDR EGDDGRNGGN 360 AKVWAPKSIR IDDVDEVARS SIWSLVGIKG DQTKQQDAAD DHAGGHSKQL GTVFEPKRGE 420 ATKKAMMTSS PLLHANPVAL TRSVAFQEGS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G138455 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G138455_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX428459 | 0.0 | JX428459.1 Zea mays subsp. mays clone pUT3054 DOF40 C2C2-DOF type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143091.1 | 0.0 | uncharacterized protein LOC100275567 | ||||
TrEMBL | A0A1D6KVQ3 | 0.0 | A0A1D6KVQ3_MAIZE; DOF40 C2C2-DOF type transcription factor | ||||
TrEMBL | A0A317Y9P8 | 0.0 | A0A317Y9P8_MAIZE; Cyclic dof factor 2 | ||||
TrEMBL | K0DCM6 | 0.0 | K0DCM6_MAIZE; DOF40 C2C2-DOF type transcription factor (Fragment) | ||||
STRING | GRMZM2G138455_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 4e-42 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G138455_P01 |