PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G129674_P01
Common NameEREB179, TIDP3567
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 302aa    MW: 32685.7 Da    PI: 5.1475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G129674_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-16115164255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +grW+AeIrdp+    + +r +lg++ taeeAa a+++ +++++g
  GRMZM2G129674_P01 115 KYRGVRYRR-SGRWAAEIRDPR----QgRRAWLGTYRTAEEAALAYDREARRIRG 164
                        8******99.7*********94....25************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.6E-28114172IPR001471AP2/ERF domain
PROSITE profilePS5103221.904115172IPR001471AP2/ERF domain
SMARTSM003806.1E-33115178IPR001471AP2/ERF domain
PfamPF008472.2E-10115164IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21115173IPR016177DNA-binding domain
CDDcd000182.06E-27115172No hitNo description
PRINTSPR003674.0E-7116127IPR001471AP2/ERF domain
PRINTSPR003674.0E-7138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MCGGAILAEL IPARVHRPLT AATLWAAALS GTTTVGKWKA DAAAATDDDD DEEFEAEFQL  60
FDDDDECEAE FQLLDDHQPS PAASPEASGC KRKPALAPPA GAPASTDPAT PCSRKYRGVR  120
YRRSGRWAAE IRDPRQGRRA WLGTYRTAEE AALAYDREAR RIRGKSARLN FPLLIPHEGP  180
GRHARTPVAI DLNLPPVSDG LGVPAPAGVG DDGTANADGD ADMASTKTQS TLARVKELIA  240
QGPHDERLAA RIVPELMMHG SRDEAAALIA EFSRQMEEIA ALRRDLETRE RQLVQLVSLV  300
LR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-17114175466ATERF1
3gcc_A9e-17114175466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.803430.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G129674
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G129674_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370710.0BT037071.1 Zea mays full-length cDNA clone ZM_BFb0153L12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136511.10.0uncharacterized protein LOC100216626
TrEMBLB4FIY30.0B4FIY3_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G129674_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-22ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]