PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G126646_P01 | ||||||||
Common Name | HB83, HDZIV13_OCL13, ZEAMMB73_541243, Zm.38765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 698aa MW: 76174 Da PI: 6.6327 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1e-20 | 18 | 73 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k GRMZM2G126646_P01 18 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 73 678899***********************************************998 PP | |||||||
2 | START | 163 | 2.2e-51 | 210 | 434 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 +a +a++el+++a+a+e +Wvk e +n d++ + f++ ++ ++e +r+sg+v+m ++ lv ++d++ +W+e ++ ka GRMZM2G126646_P01 210 MATRAMDELIRMAQAGEHLWVKAGgrEVLNVDTYDSVFAKPGAasfrgpdVHVEGSRDSGLVFMSAVGLVDMFMDSS-KWTEFFPaivsKAR 300 5789******************999955555555555544444566***99**************************.************** PP EEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEE CS START 81 tlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvt 165 t++v+ +g + l+lm+ el ++sp+vp R+f f+Ry+rq ++g w+i+d+Svd +q+ ++ R+ +lpSg+li ++++g skvt GRMZM2G126646_P01 301 TVDVLVNGmagrsESLVLMYEELHVMSPVVPtREFCFLRYCRQIERGLWAIADISVDLQQHDARfGAPPSRSCRLPSGCLIADMADGSSKVT 392 **************************************************************99*99999********************** PP EEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 wveh++ ++r+p h l+r l+ sg+a+ga +w+a+lqr ce+ GRMZM2G126646_P01 393 WVEHMEIEDRVPiHLLYRDLILSGAAFGAHRWLAALQRACER 434 ****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.42E-20 | 7 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 13 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.058 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-19 | 16 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-19 | 17 | 76 | No hit | No description |
Pfam | PF00046 | 3.0E-18 | 18 | 73 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.558 | 200 | 437 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.81E-32 | 201 | 435 | No hit | No description |
CDD | cd08875 | 6.32E-106 | 204 | 433 | No hit | No description |
SMART | SM00234 | 3.0E-40 | 209 | 434 | IPR002913 | START domain |
Pfam | PF01852 | 4.4E-44 | 210 | 434 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.2E-6 | 318 | 404 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.05E-20 | 454 | 690 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MDFGDDVMDG GSDAQRRKKR YHRHTPRQIQ QLEAMFKECP HPDENQRMQL SRELGLEPRQ 60 IKFWFQNRRT QMKAQHERQD NCFLRAENDK IRCENIAMRE ALRSVICPTC GGPPVADDYF 120 DEQKLRMENA RLKEELDRVS SLTSKYLGRP ITQLPPAQAA LSMSSLDLSV GGLGSPSLDL 180 DLLSGGSSGY PPFHLPMPVS EMERPMMAEM ATRAMDELIR MAQAGEHLWV KAGGREVLNV 240 DTYDSVFAKP GAASFRGPDV HVEGSRDSGL VFMSAVGLVD MFMDSSKWTE FFPAIVSKAR 300 TVDVLVNGMA GRSESLVLMY EELHVMSPVV PTREFCFLRY CRQIERGLWA IADISVDLQQ 360 HDARFGAPPS RSCRLPSGCL IADMADGSSK VTWVEHMEIE DRVPIHLLYR DLILSGAAFG 420 AHRWLAALQR ACERCACLVP AGMPHRDIAV AGVTPEGKRS MMKLSQRMVS SFCASLSASQ 480 LHRWTTLSGP SDVGVRVTVH RSTDPGQPSG VVLSAATSIW LPVPCDRVFA FVRDEHTRSQ 540 WDVLSHGNPV QEVSRIPNGS HPGNCISLLR GLNASQNSML ILQESCTDGT GSLVVYAPID 600 IPAANVVMSG EDPSAIPLLP SGFTILPDGR PGAPSSSSAG GPLVGSPAAA GSLVTVAFQI 660 LVSSLPSSRL NAESVATVNS LISTTVEQIK AALNCASH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.38765 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G126646 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G126646_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728523 | 0.0 | KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001142912.2 | 0.0 | uncharacterized protein LOC100275344 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | G2J5S7 | 0.0 | G2J5S7_MAIZE; HB transcription factor | ||||
STRING | GRMZM2G126646_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G126646_P01 |
Publications ? help Back to Top | |||
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