PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106798_P01
Common NameLOC100278824, ZEAMMB73_421624
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 325aa    MW: 34384 Da    PI: 8.4332
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106798_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.6e-4176152278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        C v+gC++dls+++eyhrrhkvCe+hskapvv+v g+e+rfCqqCsrfh+lsefDeekrsCr+rL++hn+rrrk+q+
  GRMZM2G106798_P01  76 CSVDGCRSDLSRCREYHRRHKVCEAHSKAPVVVVGGQERRFCQQCSRFHMLSEFDEEKRSCRKRLDGHNRRRRKPQH 152
                        **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.5E-3371137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.26573150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.63E-3975155IPR004333Transcription factor, SBP-box
PfamPF031101.1E-3076149IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDWAAASGSP SWGAAATDPG PTMLSFAGPS SSAADAEVRL QDFAAGLAQS SRPTGAAPGA  60
GRRSRAAVGG AGAEACSVDG CRSDLSRCRE YHRRHKVCEA HSKAPVVVVG GQERRFCQQC  120
SRFHMLSEFD EEKRSCRKRL DGHNRRRRKP QHDLTNLGGF FPYHQVNQFE FYPQTIPTVG  180
QNSDAVHLVG RQQPFSISFS RTPDEFPFPQ GGGSSVLHHL HAARPGHHAE GSSHTGSSTR  240
DNALSGTLGP ECALSLLSSS LRRPSTAGVP AVGQPQVTAS STTAVSQAAT AAVATAAFAA  300
SAGHHVFVPD AMFEDPSQAL PFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-2869149484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132149KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.247930.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106798
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106798_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0646940.0BT064694.1 Zea mays full-length cDNA clone ZM_BFb0036O07 mRNA, complete cds.
GenBankBT0652750.0BT065275.1 Zea mays full-length cDNA clone ZM_BFb0077F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352598.10.0SBP-transcription factor 3
RefseqXP_008677050.10.0squamosa promoter-binding protein-like (SBP domain) transcription factor family protein isoform X2
SwissprotQ2R3Y11e-86SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLC0P8S50.0C0P8S5_MAIZE; SBP transcription factor
STRINGGRMZM2G106798_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129612532
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-38SBP family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]