PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G086277_P01 | ||||||||
Common Name | LOC100284277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 404aa MW: 45066.6 Da PI: 7.2358 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.5e-07 | 152 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg++F+++ +L+rH r H GRMZM2G086277_P01 152 YSCSVCGRRFPTRPDLTRHFRQlH 175 99*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.9E-6 | 150 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-5 | 151 | 178 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.5E-5 | 152 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.464 | 152 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 154 | 175 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 8.55E-9 | 218 | 302 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 4.0E-5 | 227 | 291 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MPHVLSFLHL HLPLNTAPLH SFRVHRTRHS HPHLSLRTRR ASATAAAAEA ENPSASADVE 60 MVRGRDGVWT ARSPTVVVLW DLDNKPPRGP PFPAATALIG AASLLGRVVS ISAFANRHAF 120 SHLPGWVTAE RRARRALDRS ERAGVVVPSV PYSCSVCGRR FPTRPDLTRH FRQLHERERN 180 KKLSRLRSLK GKKRQKFRER FITGNTKYED AARELLTPKV GYGLASELRR AGVHVRTVPD 240 KPQAADHALK RQVKHSVACG VDWLVLVSDD SDFTDTVRNA RAADLRTVVV GDGCRALGKV 300 ADIWLPWDRV ENGEVDEEML RSCTFSEYRE DQGTERDGQF IGDWDAGDFD DVVDDIVGTR 360 TSLLGATTMS AFADEDIADG IFGVELTGDN MFWSCDDEEE DDYL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.123010 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G086277 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G086277_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967761 | 0.0 | EU967761.1 Zea mays clone 305881 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150644.1 | 0.0 | zinc finger, C2H2 type family protein | ||||
TrEMBL | B6TRZ6 | 0.0 | B6TRZ6_MAIZE; Zinc finger, C2H2 type family protein | ||||
STRING | GRMZM2G086277_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9806 | 32 | 34 | Representative plant | OGRP3048 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 2e-82 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G086277_P01 |