PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G060000_P02
Common NameZm.26889
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 426aa    MW: 47098 Da    PI: 8.7166
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G060000_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.35.4e-2355120171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        rk+ksL+ll+++f++l+ +++ +++ l+++ak+L    v  +rRRiYDi+NVLe+++++ +++kn+++w g
  GRMZM2G060000_P02  55 RKQKSLGLLCSNFVALYDREDVEVIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWLG 120
                        79****************9999************...**..****************************87 PP
2E2F_TDP74.88.6e-24200281171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvkn.krRRiYDilNVLealnliek.....kekneirwkg 71 
                        rkeksL+lltq+f+kl+ + e g+++l+e+a+ L+ e     ++++ k+RR+YDi+NVL++lnliek     ++k+++rw g
  GRMZM2G060000_P02 200 RKEKSLGLLTQNFVKLFLNMEVGTISLDEAARLLLGEghadsNMRTaKVRRLYDIANVLSSLNLIEKtqqadTRKPAFRWLG 281
                        79****************************************7776377********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-2651121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.32E-1654119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.8E-2855120IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-2056120IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-23197282IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-32200281IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-19201281IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.59E-12202281IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDASAATPAP GPSFSGAESS AAAAQPPAEA PQLRVHGAGS GSGVARACRH HAYSRKQKSL  60
GLLCSNFVAL YDREDVEVIG LDDAAKRLGV ERRRIYDIVN VLESVGILVR RAKNRYTWLG  120
FGGVPAALKE LKERALRKMS GSPVLLSMED SSTANLSDDE DDEKLGDADE DAESEKLSQP  180
VDNTSDKPDA PSCRLRSDHR KEKSLGLLTQ NFVKLFLNME VGTISLDEAA RLLLGEGHAD  240
SNMRTAKVRR LYDIANVLSS LNLIEKTQQA DTRKPAFRWL GQAKRKQDNN VMVSVPPSMK  300
AMPNKRAFGT DLTNIDNKRG KLDSAAENKV KLMQGAGNIV KTFERQLVQG KRSDFVYGPF  360
HPAGAKKHET DDQTVKQQER KNIQDWENLA VSFRPQYQNQ ALNDLFGHYV EAWKSWYVDL  420
TQETAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-34542733228Transcription factor E2F8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1583410.0cell culture| endosperm| meristem| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G060000
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G060000_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280270.0KJ728027.1 Zea mays clone pUT6165 E2F-DP transcription factor (E2F12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649275.10.0E2F transcription factor-like E2FE
RefseqXP_008649276.10.0E2F transcription factor-like E2FE
TrEMBLK7UGV90.0K7UGV9_MAIZE; E2F transcription factor-like E2FE (Fragment)
STRINGGRMZM2G060000_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-104DP-E2F-like 1