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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G043813_P01 |
| Common Name | LOC100383946, ZEAMMB73_660685 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
NAC |
| Protein Properties |
Length: 293aa MW: 32395.4 Da PI: 5.7558 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G043813_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 159.7 | 1.2e-49 | 10 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrF P+deelv++yL +kv++++ ++ evd++ ePw+Lp ++k + +ewyfFs rd+kyatg r+nratk+gyWkatgkd+ev
GRMZM2G043813_P01 10 LPPGFRFYPSDEELVCHYLYRKVANERSVQ-GTLVEVDLHAREPWELPDAAKLTASEWYFFSFRDRKYATGPRTNRATKTGYWKATGKDREV 100
79***********************99555.88***************87788899************************************ PP
NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + +vg++ktLvfy+grap+g+k+ Wvmhe+rl
GRMZM2G043813_P01 101 RDPaaRAVVVGMRKTLVFYQGRAPSGVKSCWVMHEFRL 138
*99777778***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MGLREIESTL PPGFRFYPSD EELVCHYLYR KVANERSVQG TLVEVDLHAR EPWELPDAAK 60
LTASEWYFFS FRDRKYATGP RTNRATKTGY WKATGKDREV RDPAARAVVV GMRKTLVFYQ 120
GRAPSGVKSC WVMHEFRLDS PRTTTTPPKE DWVLCRVFQK RKVDGSEQDN GVSPSPPVFA 180
GASQSQGVVL PPDQPCVVDA YVVVDQPGSS SVGLAPPQEN LGSGLDALLT NGAMWQYTSS 240
VFGHLLPQEA TSSPPVMDLG SRGGEGGDYG CSFFYDSSFE DMANIGFRQG WMG
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First observed in young embryonic SAM. Later confined to the boundaries between cotyledon primordia and the SAM. In mature embryos, localized around first leaves primordia. Only weakly present in vegetative SAM. In inflorescence, observed at the boundaries between floral organ primordia. In callus, expressed during transition to shoot development, with a progressive restriction to specific areas corresponding to future shoot apex. {ECO:0000269|PubMed:11245578, ECO:0000269|PubMed:12492830}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in inflorescence stems, rosette leaves, aerial parts of seedlings, flowers, floral buds and roots. {ECO:0000269|PubMed:11245578}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:11245578, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:12787253, ECO:0000269|PubMed:14617069, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. Directly induced by ESR2 in response to cytokinins. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17287247}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT068695 | 0.0 | BT068695.1 Zea mays full-length cDNA clone ZM_BFb0378P07 mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Shinohara N,Ohbayashi I,Sugiyama M
Involvement of rRNA biosynthesis in the regulation of CUC1 gene expression and pre-meristematic cell mound formation during shoot regeneration.
Front Plant Sci, 2014. 5: p. 159
[PMID:24808900] - Kamiuchi Y,Yamamoto K,Furutani M,Tasaka M,Aida M
The CUC1 and CUC2 genes promote carpel margin meristem formation during Arabidopsis gynoecium development.
Front Plant Sci, 2014. 5: p. 165
[PMID:24817871] - Gonçalves B, et al.
A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
Plant J., 2015. 83(4): p. 732-42
[PMID:26119568] - Cui X, et al.
REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis.
Nat. Genet., 2016. 48(6): p. 694-9
[PMID:27111035] - Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
Plant J., 2017. 90(3): p. 435-446
[PMID:28161901] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549] - González-Carranza ZH, et al.
HAWAIIAN SKIRT controls size and floral organ number by modulating CUC1 and CUC2 expression.
PLoS ONE, 2017. 12(9): p. e0185106
[PMID:28934292]
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