PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G030403_P01
Common NameZEAMMB73_247818
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 281aa    MW: 32552.5 Da    PI: 4.9165
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G030403_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-11137180447
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WTt+E+  ++++ + +G g W+ I++++  +Rt+ ++ s+ qky
  GRMZM2G030403_P01 137 WTTDEHRNFLRGLEAFGRGEWSNISKYFVPTRTPVDISSHAQKY 180
                        *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.363127185IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-10129184IPR009057Homeodomain-like
SMARTSM007171.9E-8133183IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-13135185IPR009057Homeodomain-like
CDDcd001672.82E-8137181No hitNo description
PfamPF002497.8E-9137180IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.6E-12137184IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDPNFNGVWS ASEMDMAKSL IPSQITNKTY TNDMETKHID FVDDLQAMFP WKEKHQVTNL  60
YVELLVEIMR AQSNNQHVVP SSVLVNDNFG MLSKPMDNMK VIEGYLMDEM EAMRILEEQP  120
NMLNVIHKKK RHGVKFWTTD EHRNFLRGLE AFGRGEWSNI SKYFVPTRTP VDISSHAQKY  180
FRRQECTTGK QGFNIDNVSF YGTQPWVQNN PSSCEALTFT GGAYNTNYND LDEKHVAFNS  240
FASDNQLATW FVDQHTSSYL APLMEEDVSQ TNKWMDLENI D
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G030403
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G030403_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662953.10.0uncharacterized protein LOC103641377
TrEMBLK7TIK50.0K7TIK5_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G030403_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-18MYB family protein