PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G017145_P02
Common NameZm.86044
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 266aa    MW: 29881.5 Da    PI: 7.0279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G017145_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-063786154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +++ ++erE+r Rd+ N+ f eL  +l ++     + + Ka iL  +++ +k+L
  GRMZM2G017145_P02 37 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRILKDL 86
                       678899**********************97....57788888888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.2E-1033105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1133105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.95E-43491No hitNo description
PROSITE profilePS5088811.1153686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-43786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVPRDRAHSA AAATAPPTEK PVQGPIQNNK CEKKAPKKVH KSEREKRKRD KQNDLFGELG  60
NMLEPDRQNN GKACILSDTT RILKDLLSQV ESLRKENNTL KNESHYVALE RNELLDETNM  120
IRGEISDLQN EMRMRLEDNS IWSHDTSRPN LTAPHPATTV FTLQHSPHPQ VIATMTLPLQ  180
QPAVVEQSYA APRRELQLFP EAAPTEDTEP PQNEGTSNHV MRPQARYPPA MTTLPGHVYP  240
VLPRVEDEQR SSGTTGSREE GGVGNR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.860440.0embryo| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G017145
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G017145_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0172690.0BT017269.1 Zea mays clone EL01N0312C03.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149147.10.0uncharacterized protein LOC100282769
SwissprotQ69V101e-112BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A1D6IKG70.0A0A1D6IKG7_MAIZE; Amelogenin like protein
TrEMBLA0A3L6E3W60.0A0A3L6E3W6_MAIZE; Transcription factor bHLH47
STRINGGRMZM2G017145_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Representative plantOGRP6793812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-30bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]