PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G002978_P02
Common NameLOC100383551
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 519aa    MW: 55331.1 Da    PI: 7.5002
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G002978_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.71.3e-17132221186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +Wt+  +  L++a++++ e+l+rg+l++ +We+v+ ++     ++   +s +qCk+k++nl+kryk + ++ ++   ++ s++p+f+++e
  GRMZM2G002978_P02 132 EWTDGAISSLLDAYTDRFEQLNRGNLRGRDWEDVAGAVtdgqGKTTGAKSVEQCKNKIDNLKKRYKVECQRLSSSGGGAISHWPWFKKME 221
                        5*************************************776544555799****************9999999998999**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-20130223No hitNo description
Gene3DG3DSA:3.40.1160.104.9E-72275512IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.903277513IPR015963Uridylate kinase, bacteria
SuperFamilySSF536339.16E-52277512IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042547.42E-103280513No hitNo description
PfamPF006963.2E-16280492IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MASCDDDFVL LGDDAHQPAT PPPPAPTAQQ PAPPPPPPPQ ASHPFSFTDA VAGAAAGAGS  60
FAQAQEESNH HAERGKPAHH AKRGRERAEE FSSDGGEYCS YINSSGSGGG GKKGRGGGGS  120
SSVSDYRKDR EEWTDGAISS LLDAYTDRFE QLNRGNLRGR DWEDVAGAVT DGQGKTTGAK  180
SVEQCKNKID NLKKRYKVEC QRLSSSGGGA ISHWPWFKKM EQIVGNSASP ASSKLLTAAE  240
DEKPRQQQQH SSKRYPLSCT GPPTGVGSSR TNPLSNPRWK RVLLKIGGTA LCGAAHQNVD  300
PKVIMLIARE VQVACHHGVE VAIVVGGRNI FCGDNWVAAT GTDRASTYPI GMMASVMNSV  360
LLQASLEKIG VETRVQTALM MQEVAEPYIR RRAIRHLEKG RVVIFGGIGV GIGNPLFTTD  420
TAAALRASEI NADVVLKGIV GDDEYGCPPR SNSNASFEHI SFRELAARGI TKMDMTAVTC  480
CEENNIPVVI FNMLEPGNIS RAICGDQIGT LVDQSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A8e-622715121239Uridylate kinase
3ek5_B8e-622715121239Uridylate kinase
3ek5_C8e-622715121239Uridylate kinase
3ek5_D8e-622715121239Uridylate kinase
3ek5_E8e-622715121239Uridylate kinase
3ek5_F8e-622715121239Uridylate kinase
3ek6_A8e-622715121239Uridylate kinase
3ek6_B8e-622715121239Uridylate kinase
3ek6_C8e-622715121239Uridylate kinase
3ek6_D8e-622715121239Uridylate kinase
3ek6_E8e-622715121239Uridylate kinase
3ek6_F8e-622715121239Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117GGKKGRGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.667640.0embryo| endosperm| meristem| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G002978
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G002978_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0675670.0BT067567.1 Zea mays full-length cDNA clone ZM_BFc0089D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349019.10.0uncharacterized protein LOC100383551
TrEMBLA0A1D6EBV20.0A0A1D6EBV2_MAIZE; Aspartate/glutamate/uridylate kinase family protein
STRINGGRMZM2G002978_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-156Trihelix family protein