PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00007555.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 324aa MW: 37312.1 Da PI: 4.386

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00007555.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.9	3.1e-14	85	169	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessst 78 +Wt++ v +L+e+ ++ +l+r++l+ +W +v++k++e+ + ers kqC+ ++ l+++ykk+k+ ++++ + ss+ FANhyb_rscf00007555.1.g00001.1 85 EWTEHAVFVLLEVWGDRFLQLGRKSLRSEDWGDVAAKVSEGCMmERSEKQCRRMLDMLKRKYKKEKAKMEEG--GGSSN 161 5***********************************999877***********************97..7888 PP trihelix 79 cpyfdqle 86 + y++++e FANhyb_rscf00007555.1.g00001.1 162 WGYYKKME 169 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.9E-18	84	170	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
NRYSPENDDD AIEDDLDEES YGKQDDVVVV AEQYHQHHPN RGFDAENGWE WHPKKRKLKN 60 LDPGSGYEFA PRVKMPGRVA SGQEEWTEHA VFVLLEVWGD RFLQLGRKSL RSEDWGDVAA 120 KVSEGCMMER SEKQCRRMLD MLKRKYKKEK AKMEEGGGSS NWGYYKKMEM LMANSMRQEC 180 GLACGVDNGE YVFMNTRVYL EKSNGFDEMM DSPGESETDD DENENENVSG QNGFGFALPR 240 QGGSSYRVLA ESIQKFGEIY ENLESSKRQQ MMELEKMRRE FNKEMEAQKK QILERAQAEI 300 AKIQEAGDDD DDEDSDASAE DLTE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288693.1	0.0	PREDICTED: trihelix transcription factor ASIL1
Refseq	XP_011458483.1	0.0	PREDICTED: trihelix transcription factor ASIL1
Refseq	XP_011458517.1	0.0	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A2P6RJK9	1e-147	A0A2P6RJK9_ROSCH; Putative transcription factor Trihelix family
STRING	XP_004288693.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-74	Trihelix family protein