PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00007014.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 280aa    MW: 32624.4 Da    PI: 6.962
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00007014.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.6e-20250351
                                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    ien++nrqvt     ngi+KKA+EL vLCda+v++i+ sst++++ey+s
  FANhyb_rscf00007014.1.g00001.1  2 IENQTNRQVTIRSDENGIIKKAQELTVLCDAQVSLIMQSSTNRIHEYIS 50
                                    9**********************************************86 PP
2K-box454.5e-1662118157
                           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqq 57 
                                     yqk+ + +l+++++e ++++l kLk+ +++L+r +R++lG dL+ L+l eLq Le+q
  FANhyb_rscf00007014.1.g00001.1  62 YQKNLQIDLWSSHYEAMKENLWKLKEVNNKLRRDIRQRLGHDLDGLNLAELQDLEEQ 118
                                     78888899***********************************************98 PP
3K-box13.92.3e-061501786997
                           K-box  69 KnellleqieelqkkekelqeenkaLrkk 97 
                                     K+++l++q ++++kk ++l+e+n +L + 
  FANhyb_rscf00007014.1.g00001.1 150 KYHVLKTQADTTRKKVRNLEERNSQLVHS 178
                                     99************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.997152IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-15151IPR002100Transcription factor, MADS-box
PfamPF003193.8E-14248IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-24287IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-91429IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-92950IPR002100Transcription factor, MADS-box
PfamPF014868.2E-1073177IPR002487Transcription factor, K-box
PROSITE profilePS512979.22275185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
LIENQTNRQV TIRSDENGII KKAQELTVLC DAQVSLIMQS STNRIHEYIS PTTTHKKVFD  60
LYQKNLQIDL WSSHYEAMKE NLWKLKEVNN KLRRDIRQRL GHDLDGLNLA ELQDLEEQDG  120
SIRAYHTKSI QDFNQHLTVL MMVYWHWLIK YHVLKTQADT TRKKVRNLEE RNSQLVHSYA  180
GSEDPQYGYV LKETMNLRLH WQMEHTTCIF SIASTITTTL TMDMMEVHLS PALLIFTTLS  240
IITTATTTLR MDTVEVRLCP PLLISMISAL LESVKYSDQT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287844.11e-93PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotQ003J23e-60TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2P6RM272e-87A0A2P6RM27_ROSCH; Putative transcription factor MADS-MIKC family
TrEMBLQ93X102e-87Q93X10_ROSRU; MADS-box protein
STRINGXP_004287844.14e-93(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]