PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005955.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 319aa    MW: 37080.1 Da    PI: 8.5419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005955.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05109133123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     ++C+  dC  +++r+++L+rH+  H
  FANhyb_rscf00005955.1.g00001.1 109 FVCTidDCRSTYRRRDHLNRHLLQH 133
                                     89*******************9887 PP
2zf-C2H211.20.0012138163123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     +kCp  +C+  F  + n krHi   H
  FANhyb_rscf00005955.1.g00001.1 138 FKCPieNCKSEFAFQGNVKRHIVEfH 163
                                     89*******************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-9105135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.45E-6106135No hitNo description
SMARTSM003550.0093109133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432109138IPR007087Zinc finger, C2H2
PROSITE patternPS000280111133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-4136159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.575138168IPR007087Zinc finger, C2H2
SMARTSM003550.96138163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4173189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035567178214IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.48E-6203242No hitNo description
Gene3DG3DSA:3.30.160.607.9E-8204242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554220246IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995220246IPR007087Zinc finger, C2H2
PROSITE patternPS000280222246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
NQHIYELYRV DRVKHWIPPK NSKMREGMDL NGPVSPSCEA PSSDPQSRSV TIENFSEVRF  60
RQREVLDPKQ RTPKCEMVQL EWTRTRGETS CEAPSSDPQS HFRDLQRPFV CTIDDCRSTY  120
RRRDHLNRHL LQHQGKLFKC PIENCKSEFA FQGNVKRHIV EFHRKDRPST SVEGQKEHVC  180
QEPGCGKVFQ LLQSCGNMRV LMKSSLLQHV KAVHIQQKPF ACSFSGCGKT FSYKHVRDTH  240
EKSGCHVYAY GDFEEADEQF RSRPRSGCKR MCPTVEMLVR KRVTPPDQFG PETEFLSNFF  300
PQEEETNSGS RPSCILMFM
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287098.11e-122PREDICTED: transcription factor IIIA-like isoform X1
SwissprotQ84MZ43e-26TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2P6RJH42e-86A0A2P6RJH4_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004287098.11e-122(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.15e-29transcription factor IIIA