PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00005933.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SBP

Protein Properties

Length: 329aa MW: 36582.9 Da PI: 8.8757

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00005933.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.2	3.1e-40	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++h++a+ ++v +++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk+++ FANhyb_rscf00005933.1.g00001.1 149 VCQVEDCKADLSHAKDYHRRHKVCHMHARATRAMVGNIMQRFCQQCSRFHVLQEFDEGKRSCRKRLAGHNRRRRKTHP 226 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.0E-32	144	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.556	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.27E-37	148	230	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.6E-29	150	223	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MEAFGGKPRS LYGPVVPDME AIGKRSLEWD LNDWRWDGHA FTATPLNSVP SDCRSRQLFP 60 IGPETPSNAG WSNSSSSGSD DIGLGNEKGK RELEKRRRAV IEENEEVDDE AGSLNLKLGG 120 QVYPILEEDV KAGKKMKTKL VGTTSNRAVC QVEDCKADLS HAKDYHRRHK VCHMHARATR 180 AMVGNIMQRF CQQCSRFHVL QEFDEGKRSC RKRLAGHNRR RRKTHPDTVV NGGSMNDERG 240 SSYILFTLLR ILSNMQSNSS DQTKDQDLLS HLLKNLDNNN GTADGRNVSA LLQGSQILFN 300 GGASVQTTQK VPHLDFNGNE PGRPSVSTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	149	223	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297083.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
Swissprot	Q9S7P5	9e-79	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2P6QZL3	0.0	A0A2P6QZL3_ROSCH; Putative transcription factor SBP family
STRING	XP_004297083.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	5e-77	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]