PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005843.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 727aa    MW: 83326.4 Da    PI: 8.6188
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005843.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1385.3e-1213822590
                            FAR1 25 ngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                                    +g+  +r++vC+k+g+r+++  +   + + r++r+ tr gC ak++v+ +  +g + v  ++++H+H++a
  FANhyb_rscf00005843.1.g00001.1 13 EGKLRRRQWVCNKQGYRDKKWLDretDGSGRNRRKLTRQGCMAKFRVNYMVdEGYYAVRAFDEDHSHQCA 82
                                    567899************98766555788999******************98999************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-101482IPR004330FAR1 DNA binding domain
PfamPF105516.3E-28204298IPR018289MULE transposase domain
PROSITE profilePS509669.557489534IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-4509536IPR006564Zinc finger, PMZ-type
PfamPF044346.8E-5511526IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.101.3E-4648719IPR001878Zinc finger, CCHC-type
SMARTSM003431.6656672IPR001878Zinc finger, CCHC-type
SMARTSM003430.19703719IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.565704719IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
FGPRRDTRGG LFEGKLRRRQ WVCNKQGYRD KKWLDRETDG SGRNRRKLTR QGCMAKFRVN  60
YMVDEGYYAV RAFDEDHSHQ CANPRQAAFI RSHRNVDEAA LGNTNTMTKV SIRPCHAFEY  120
MVEQSGGYIT VGFTRKDLYN KLDQQRRTTP FESDSEGALS YMSALAAKDP HFYCRFSVDD  180
EDRLVNIFWR DGNSYVDYMC WGDVLVFDST YNTNVYGRPL VLFVGSNNHR GSILFGVGIL  240
GDETADTYTW LLSTFLDSMK GKKPTAVITD GAESMHIAIG RVMPEARHRL CSWHLSRNAH  300
TNLNSKDAEK AFNGCMNKFQ TVQHFEEMWE VMLQEFELRN HFWTTWMYGR RQLWAQAFFG  360
DVHMAGMRST QRSESMNNFV KDTLGAGKKK MVDIVPQMDR AHMRLRNNQV RDDFNTMNSF  420
PVIETHLEDL EGHAASTYTY DVYKWVKKEI MKEKFLVTKG FQAAAEDDHS VHKMANFKRQ  480
QYVHEVVYYH GRLTTDEEAL EEAVLPPIMV CTCNMFQYKG VPCRHMFMLM KQENMSKIPR  540
SLIMKRWTRN AGSVCDIEYP DGQNMDKEAL EVSRFGALTG DCNRMCSYAS KTTKGYSMLK  600
KEIARLTALI EGLVKDSEQV HVCDPQPERT GCVIRDPVVV KKKGNQNQET GRRPITCSYC  660
KGAGHNIQSC GERKEKEREA AAQQSVGEDN PPSVSTPAKK VYHCGKCNGP GHTARSCKNA  720
PAPSNSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308570.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004308570.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1389628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-86FAR1-related sequence 5