PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00005773.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GRAS | ||||||||
Protein Properties | Length: 630aa MW: 70149.8 Da PI: 5.4571 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 155 | 6.8e-48 | 460 | 630 | 1 | 170 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknssee 77 l++lL+ cA+avs++d++ ++lL+++++++sp gd qRla++f+++L+ar+a+ +++++a +s+ + +e+ FANhyb_rscf00005773.1.g00001.1 460 LRNLLILCAQAVSTNDFRTSTELLKQIRQNSSPFGDGSQRLAHCFANGLEARMAGagIRTQISHAAVASKR---KAVEK 535 6899**************************************************93334444444444444...49*** PP GRAS 78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..s 154 l a+++ ++P+ k+s + N++I++ +e+++++Hi+Df+i +G+QWp L+++L+ Rp+gpp+lRiTg++ p++g FANhyb_rscf00005773.1.g00001.1 536 LRAYQVHLSACPFKKVSIFFMNKMIMQMAENATTLHIVDFGILYGFQWPILIHKLSMRPGGPPKLRITGIEGPQPGfrP 614 ***************************************************************************9*99 PP GRAS 155 keeleetgerLakfAe 170 +e +eetg+rLak++e FANhyb_rscf00005773.1.g00001.1 615 AEWIEETGRRLAKYCE 630 ************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 35.839 | 434 | 630 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-45 | 460 | 630 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MDPTYTGFPD FINDIDFEPM LPNSSQFSET PNQYQFNQLS PDFDLLSNQF SIPPQPESSN 60 LAPPISLSTE GESFYPNGNS FSVPTTVSPG VDSLSSDDET VFKFVNQMLM EEEENIEQNH 120 TMSYDPLGLR VTERSFYDIL GQQYPVSPNQ QPQQPKRPFS VDQTNQQPLY DDQDVESPDS 180 FFSGNSSDFN ASSSPSTGPS NSVDSQSLGD YGEQKLSLLQ TSLSSDSVYQ FNSHSISNSQ 240 LSVPLTNSLP AYGNGMSESS VNQFLAQNIY TDSESVLQFQ RGLEEASKFL PKVNPLVIDL 300 ESSRVSPEMK AHAPTVMVNK ERSERMNSPS RRRGRRNSLN GSRERKKSPD VSRGRKKSPD 360 VSRGRKNHER EDVDSEEGRS SKQSAIYKEV EEEDDELSKL FDKVLLFNHG DTCGSSGDNV 420 DVQNEKSKNS QANGQPQTSN GGGEKSRAKK QGKKKETVDL RNLLILCAQA VSTNDFRTST 480 ELLKQIRQNS SPFGDGSQRL AHCFANGLEA RMAGAGIRTQ ISHAAVASKR KAVEKLRAYQ 540 VHLSACPFKK VSIFFMNKMI MQMAENATTL HIVDFGILYG FQWPILIHKL SMRPGGPPKL 600 RITGIEGPQP GFRPAEWIEE TGRRLAKYCE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-23 | 443 | 630 | 1 | 183 | Protein SCARECROW |
5b3h_D | 5e-23 | 443 | 630 | 1 | 183 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024156004.1 | 0.0 | uncharacterized protein LOC112163987 | ||||
TrEMBL | A0A2P6QJ02 | 0.0 | A0A2P6QJ02_ROSCH; Putative transcription factor GRAS family | ||||
STRING | XP_004295968.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 3e-96 | SCARECROW-like 14 |