PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00004811.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 330aa MW: 36262.7 Da PI: 7.0244 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0016 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H FANhyb_rscf00004811.1.g00001.1 150 YECKTCNRCFSSFQALGGHRASH 172 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0013 | 233 | 255 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F + L H+r+H FANhyb_rscf00004811.1.g00001.1 233 HECSVCGAEFASGQALGGHMRRH 255 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.98E-9 | 149 | 172 | No hit | No description |
Pfam | PF13912 | 1.5E-10 | 149 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.45 | 150 | 177 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 150 | 172 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 152 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-4 | 228 | 255 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.98E-9 | 228 | 255 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 232 | 256 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.598 | 233 | 255 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 233 | 255 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 235 | 255 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MMMMMMEAAN LEEDQSQMMI IKGKRTKRPR QSSPIVLTTT ASSSSSPGGG GDDVEDHHHH 60 HHHQSGMMST PIRVSDQDDE TTASPATSAE LTEMSTTEEE EDMANCLILL AQSGQTQIRK 120 VQEQQLLLLQ QQQPIKAVAA ADTAPGLYVY ECKTCNRCFS SFQALGGHRA SHKKPKVISN 180 VTNTTQAQPK KALSFMEDQD EYDRRFNNNT TSTTLSLQVS NRVFGNSKGT KVHECSVCGA 240 EFASGQALGG HMRRHRTFIN TTTTAPAAPT MSSPQSHQAS NKRPRSVLEL DLNLPAPEEE 300 RLDITKLPFS SSKKEQVIVF SASPLVGCHY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306266.2 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A2P6RB51 | 0.0 | A0A2P6RB51_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004306266.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 9e-45 | C2H2 family protein |