PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00003746.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Whirly | ||||||||
Protein Properties | Length: 216aa MW: 23798.3 Da PI: 10.0353 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 185.9 | 7.2e-58 | 42 | 176 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhd 79 s+yk+kaal++ +++ptf++l++g+++++r+G+++l++++a++erkyd ek+q falsatev++l++l++k+sce+fhd FANhyb_rscf00003746.1.g00001.1 42 SIYKGKAALSLSPILPTFTKLETGSVVVERRGSVMLKFMPAIGERKYDSEKRQLFALSATEVGSLISLGPKDSCELFHD 120 7****************************************************************************** PP Whirly 80 paakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 p++++sn+G+vrk+l+++P++dG +f++l+v n+l+k+ esfsvPv+ aefav++ + FANhyb_rscf00003746.1.g00001.1 121 PSMQSSNAGQVRKSLSIKPHADG--YFFSLTVVNNLLKTRESFSVPVTTAEFAVMKAA 176 **********************5..9*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.0E-70 | 31 | 194 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 7.22E-62 | 35 | 195 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.2E-56 | 43 | 175 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
NQLSKRAASS LDAFTQSTGF STARQNFSAK GRIGNQIYAP FSIYKGKAAL SLSPILPTFT 60 KLETGSVVVE RRGSVMLKFM PAIGERKYDS EKRQLFALSA TEVGSLISLG PKDSCELFHD 120 PSMQSSNAGQ VRKSLSIKPH ADGYFFSLTV VNNLLKTRES FSVPVTTAEF AVMKAACSFA 180 LPHIIGWDRL TNKVPRGVEV QKSEMVEPQL LDEWER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-81 | 31 | 193 | 5 | 169 | StWhy2 |
3n1i_A | 1e-81 | 31 | 193 | 5 | 169 | protein StWhy2 |
3n1j_A | 1e-81 | 31 | 193 | 5 | 169 | Protein StWhy2 |
3n1k_A | 1e-81 | 31 | 193 | 5 | 169 | protein StWhy2 |
3n1l_A | 1e-81 | 31 | 193 | 5 | 169 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290267.1 | 1e-156 | PREDICTED: LOW QUALITY PROTEIN: single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 6e-88 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2P6PKB4 | 1e-150 | A0A2P6PKB4_ROSCH; Putative transcription factor ssDNA-binding-TF family | ||||
STRING | XP_004290267.1 | 1e-156 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 5e-86 | WHIRLY 2 |